LOCUS ACU36113.1 875 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 Beta-glucosidase protein.
ACCESSION CP001630-2139
PROTEIN_ID ACU36113.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_2168"
/EC_number="3.2.1.21"
/inference="protein motif:PRIAM:3.2.1.21"
/note="PFAM: glycoside hydrolase family 3 domain protein;
KEGG: bha:BH1908 glucan 1,4-beta-glucosidase"
/transl_table=11
/db_xref="InterPro:IPR001764"
/db_xref="InterPro:IPR002772"
BEGIN
1 MICRKCLAVK SNRFDFGRRR FDVFDERRAV GQFPFRDPDL PLRDRVADLL SRLTEREKIA
61 LLHQRQPAVP RLGLAEFRTG LEVAHGVAWL GEATVFPQPV GLAASWDVEL VRRVGDAAGT
121 EARGFHDRDP LNGLNVWAPV VNPLRDPRWG RNEEAYSEDP VLTSAMGTAF ASGLRGDHPF
181 YLKTAPTLKH FLGYNNETDR DTTSSDLRPR VLHEYELPCF RGPIEAGAAV AVMPSYNLVN
241 GRPAHLSPLL ESELRTWHPD GVAVVSDAFA PSNIAGSQGF RATQAEGHAA MLIAGVDNCT
301 DQGPDPELTI TAVTEALERH LLPVEVVERA VGRLLALRFR LGEFDPPERN PHAAITQEVI
361 GSHDDLALDA ARAAIVLLRN EEQALPLPRG VRLAVLGTHA DTLFEDWYSG TLPGSAVTVL
421 SGLSEFARTT FAEGVDRITL RGADGRHLAV VDGRVETTAE PGEGFDRFDW GDGAWTLRSA
481 ANRRFLGVTE DGDLVAEALA PGGWDVRELF TPEDTAEGLL LRHVVSDQTY GPFTAEVVHD
541 GAARAVALAR EADVAVVVVG NDPHVNGRET QDRTGLDLPQ LPLVRAVRAA NPRTVLVLVS
601 SYPYALDGEE DHLPAVLWTA HGGQRQGTAV AEALFGGLNP SGRLPQAWPR GAADLPDLLD
661 YDIIRSGGTY LYSTAEPLFC FGHGLSYTTF DYGEPAWDGE RVSVTVTNTG RVAGAEVVQL
721 YAARPDSAIR QPLRRLQSFR RVHLAPGESA EVELPADALW HWDVVRGRRS VEAGPCVLLV
781 GPSSRDVRAR LELDLPGERP APRTGPLRAV DFDHHSGVRL VDDAVVFPAE GDWIAFHEVT
841 PWPYETPDGT ELTREGGSTV VVTALRAGVR VERVL
//