LOCUS ACU36112.1 974 aa PRT BCT 24-DEC-2013 DEFINITION Actinosynnema mirum DSM 43827 glycoside hydrolase family 48 protein. ACCESSION CP001630-2138 PROTEIN_ID ACU36112.1 SOURCE Actinosynnema mirum DSM 43827 ORGANISM Actinosynnema mirum DSM 43827 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema. REFERENCE 1 (bases 1 to 8248144) AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C., Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Actinosynnema mirum type strain (101) JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009) PUBMED 21304636 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Actinosynnema mirum DSM 43827 JOURNAL Unpublished REFERENCE 3 (bases 1 to 8248144) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082379 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Actinosynnema mirum 101, DSM 43827 Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064 GOLD Stamp ID :: Gc01024 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 8.9x Sanger; 20x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: "Blade of grass from Raritan River NJ, USA" Collection Date :: September 1976 Isolation Country :: USA Latitude :: 40.491816 Longitude :: -74.322087 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 10-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Nocardicin A producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Actinosynnema mirum DSM 43827" /mol_type="genomic DNA" /strain="DSM 43827" /type_material="type strain of Actinosynnema mirum" /db_xref="taxon:446462" protein /locus_tag="Amir_2167" /inference="protein motif:PFAM:PF02011" /note="PFAM: glycoside hydrolase family 48; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein" /transl_table=11 /db_xref="InterPro:IPR000556" /db_xref="InterPro:IPR001919" BEGIN 1 MRYRTRAGRS RPLALTAAAV VVAGIAPVVV APVASAAVTC TVNYQVTNEW STGFGASVAV 61 RNQGDAVANW RLTWTFPSGQ TVQQGWNGTF TQSGSKVTVA APTWSPNLPS GGEVSVGFNG 121 TKGAANAAPT DFAINGTPCT GPNTAPTVSL TSPSSGASYV TGAAIPLAAT AADSDGTVAK 181 VDFLADGAVV ATDTSAPFQG SWTGASTGDH TLTARATDNK GATALSSPVG VKVLAGQAIL 241 ASPNTLSVKQ GATGAFGVSL ATAPSGPVTV AVARSAGSTD LTAGPATLTF TTANWSTKQN 301 VTVTSADNGG ALAEATFTAS ATGITPASVA VKEISPSTTD FDQAFLDQYA KIHDPSSGYF 361 RDFGGLKVPY HSVETLLVEA PDHGHQTTSE AFSYYLWLEA SYARITGDWT SFKSAWASME 421 KFAIPAKADQ PTNDKYNPSK PATYAPENPR MDQYPAQLDA NIPVGTDPIA AELKSAYGTD 481 DIYGMHWLFD VDNTYGFGRC GDGTDTAPAY INTYQRGSSE SVWETIPHSS CDTFKHGGPN 541 GFLDLFTKDA SYAKQWKYTN APDADARAVQ VALLAQQWAT SQGKAGEISS EIGKAAKMGD 601 YLRYAMFDKY FKKVGGCTSP SCPAGSGKDS AHYLMSWYYA WGGATDTSAG WAWRIGDGAS 661 HQGYQNPLAA YALSQVASLK PKSATGQQDW AKSMDRQLEL LQWLQSTDGG IAGGVTNSWE 721 GHYGAPPSGT PTFYGMFYDA HPVWRDPPSN RWFGFQAWQM ERTASLYQMT GDARAKKILD 781 KWVPWALANT TVGANGAFQI PSDMDWTGTP DTWNPSNPSG NPGLRVSVLN HSQDVGIAAS 841 LAKTLLNYAA KSGNAAARTT GEGLLTALLS HQDDKGIATP ESRADYNRFD DTYDSASGSG 901 VYVPPGWTGK MPNGDTINQS STFLSIRSMY RDDPDWPKVQ AYLNGGSAPT FEYHRFWAQA 961 EIATAFSLHS ELFG //