LOCUS ACU35739.1 913 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 cellulose-binding family II protein.
ACCESSION CP001630-1765
PROTEIN_ID ACU35739.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_1791"
/inference="protein motif:PFAM:PF00553"
/note="PFAM: cellulose-binding family II; SMART:
cellulose-binding family II; KEGG: cja:CJA_2477
endo-1,4-beta- glucanase/xyloglucanase, putative, gly74A"
/transl_table=11
/db_xref="InterPro:IPR001919"
BEGIN
1 MAPRQPEPTP PVTARARRGS RLPALLAALV TAAATLVTVA ATSPAPVAQA APASQPHTWR
61 NVEIQGGGFV PGIVFSPAER NLIYARTDIG GAYRWNQATG RWVPLLDAIG WDRWGHNGVI
121 SIAPDPVNAA KVYAAVGMYT NDWDPDNGAV LRSSDQGATW QSTALPFKLG GNMPGRGMGE
181 RLAVDPNDPR VLYLGAPSGN GLWRSTDSGV TWAKVTAFPN PGNHVADPND TTGYNSDNQG
241 VTWVTYDPRS SASGAPSRTI YVGVADKQNT VYRTTDAGAT WSRLAGQPTG YLAHKGVLDP
301 VGGFLYLATS DTGGPYDGAK GDVWKHNTAT GEWTRISPIP SDSADDHFGY SGLTVDRTNP
361 NTLMVTTQIS WWPDIIVFRS TDAGATWTRI WDFTSYPNRS FRYTMDITAS PWLSWGATPQ
421 PPEVTPKLGW MTESLEIDPF DPDRMLYGTG ATIYGATNLT AWDRGGQITL KPTAAGLEET
481 SVLDLVSPPT GAAPLVSALG DIGGFRHADL AEVPPMMFTQ PNLTSTTSLD YAESNASVMV
541 RSGNSDAAPH VAFSTDGGAN WFGGADPGGV TGGGTVAAAA DGSRFVWSPA GAGVHLSVGF
601 GNSWTASSGV PAGAVVESDR VNPRKFYALA ANRVYTSVDG GATFTAGASV AATKLHAVPG
661 REGELWLAGE GGLFRSTDGG ASAVEQANVT SAVNVGFGKA APGSAYPALY AVLTTGGVTG
721 VFRSDDTGAN WVRINDDQHQ YGNAGEAITG DPRLYGRVYL GTNGRGILYA DPSGPPPSTT
781 TTTTTPGGGT TTTTTTTTTT TTTVPPSASC AVEYRVTNQW SGGFQGSVRI TNRGATAVTG
841 WALKWTYASG QRVTGAWNGK AAQSGAEVTV TNEGWNGTIG AGGAVEFGFQ ASWQGSNANP
901 AAFTLNGGSC SPV
//