LOCUS ACU35683.1 1627 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 conserved hypothetical protein
protein.
ACCESSION CP001630-1709
PROTEIN_ID ACU35683.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_1735"
/inference="similar to AA sequence:KEGG:pRL90161"
/note="KEGG: rle:pRL90161 hypothetical protein"
/transl_table=11
BEGIN
1 MVGSIAGRLL RGLLAVLVVA SGVVPIVVFT AATAQAAGPC DAPVANKIVC ENTKPGATDW
61 QVTSKDDSIL GFTTDISYAP GETVEFKMLT PATSYRIDLY RLGYYGGAGA RLMGSATRTT
121 PQNQPACDRD TTPMPTYPTG TALIDCGNWA VSTTWTVPQD AVSGIYYARM SRTDVPADQP
181 AVNELAFVVR DDTATGKVMF QTSDSTWVAY NRYGGNSLYF GDGPGQGGQA YKVSYNRPYT
241 GGDGDENFIF NAEYPMLRFL ESNGYDLTYT TDVDSARRGE LIKKQKVFMA VGHDEYWSNE
301 QRANVEAARA AGVHLAFLTG NEIFWKTRWE ASKFGTKRDW RTIASFKETK GTQNDGLPDW
361 TGTWRDPRFP EQDGGRPENS LLGNIFVVNG RRDDSLQVPA QYGKMRLWRN TDLQTMAAGS
421 TYTFQPGTLG YEWNVVPDNG FQPAGVGQFS RTTVAMLDGP YVLQNYGDHY TPDTATHALT
481 YYKDQRSGAL VFGAGTVQWA WGLDDDHAFL TNTPTSDVRM QQATVNILAD MGVKAATLRT
541 GLTQSDGITD NQAPTAAFTS VPALSTVGAA YTFSGTVADA AGQVTGVEVS TDGGTRWHPA
601 NWLAGQTSWS YTYTPTKSGP ATLQVRAVDD SLNLSSPVSA TPGVGARTCP CGLWTDADKP
661 KNPDNADSGA LELGVKWQSS TDGYVRGVRF YKGPNDTGTH VGTLWTADGR QLATGTFTGE
721 TASGWQTLAF PIPVKVDKNT TYVVSYLSPT GHFASDSEYF SFSSRYLEPL TAPQTVRPSG
781 APGDLGNANG VFRGGAGFPN RSSLDTNYWV DVVWAPDPGP DTRAPELVST SPVSSSASVG
841 LTPTLSAAYD EGLNPASTQF TLTGPDGQVA GATSVTGDGR TAQFTPAAEL RTGTTYTASV
901 RVKDAAGNQT PEHTWTFTTG SHRPAACPCT VWDDFASPET QSADDATPVE LGTKVRFNGK
961 GEVLGVRFFK GANNTGTHTG SLWDATGKLL ATGVFTGEST SGWQTLTFAS PVVVQANTTY
1021 VVSYYAPKGH YAVTPGYFNG QTAAYGALRA LAAGVDGPNG VFRYGTGGGF PNASHNSANY
1081 WVDVVFRNGL NGDTTPPTLD SRTPAPNATD VALTAPLALT FNEPVDPASA QVWLSDPGGA
1141 KLHGEVSLSG DQKTLTWTPT GKLQPNTRYG VSALIADANG NAMAAPAEWS FTTTRTAACP
1201 CSLFSAATVP STTSADDGGS YELGVRFTPT QSGQITGVRF YKGAGNTGTH TGSLWTSTGS
1261 RMATGTFVNE TATGWQTLVF TNPVTVAPGL TYVASYTAPN GHYAIDQGYF QATGVDAPPL
1321 TAPRTGDGSP NGVFQPGGGF PTVSYQGNNY WVDVVYTPSS DTTPPVATGN TPLAGATGVD
1381 LRPTVTASFD EPVEANNTQF AVTDGGGARI DGTITLSGDR RTVSWTPKAD LTPTTRHVVT
1441 ARAADDGGNI MAEPLTWSFT TSADQTCPCS LFSAATVPST TSADDGGSYE LGVRFTPKAD
1501 GKVTGVRFYK GAGNTGTHTG TVWSTDGTSL KTGTFTDETA TGWQTLTFAE PLQVTAGTTY
1561 IASYSAPNGH FAINQGYFGG YAVDTPKLSS PATDELSRNG LFQPGGGFPT NSYQGNNYWV
1621 DVVYTTA
//