LOCUS ACU35365.1 1606 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 DEAD/H associated domain
protein protein.
ACCESSION CP001630-1391
PROTEIN_ID ACU35365.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_1413"
/inference="protein motif:PFAM:PF08494"
/note="PFAM: DEAD/H associated domain protein; DEAD/DEAH
box helicase domain protein; helicase domain protein;
SMART: DEAD-like helicase; helicase domain protein; AAA
ATPase; KEGG: scl:sce3970 putative ATP-dependent helicase"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR013701"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MTTAFSPATR QWFAGAFAAP TAAQAGAWEA AAAGENALVI APTGSGKTLA AFLWALDRLA
61 QEPPPDEPRE RCRVLYVSPL KALAVDVERN LRAPLAGIRQ ASRRLGLPEP AIEVGMRTGD
121 TPADVRRAFA RKPPDVLVTT PESLFLVLTS AARESLRGVR TVILDEVHAV AGTKRGAHLA
181 LSLERLDGLL ERPAQRIGLS ATVRPVEEVS AFLAGGRPVR VVQPESAKTI EVRVEVPVED
241 MSALGEPTGE VSGSAAGGER RTSIWPAVEQ RVLELVREHR STIVFANSRR LAERLTARLN
301 ELAAEAAEGG GPGADGPGAD GLGEGAGQGG SGSAVARFPA AAVGQSGVTV QEGPVIARAH
361 HGSMSREQRT SVEEELKSGR LPCVVATSSL ELGIDMGAVD LVVQVEAPPT VASGLQRVGR
421 AGHQVGAVSR GVVFPKFRGD LVSCAVVAER MRDGAIEAVR YPRNPLDVLA QHVVAMVALE
481 PWSVEDLARV VRGAAPFAGL PESALLAVLD MLAGRYPSEE FGELRPRITW DRVTGELRGR
541 PGAQRLAVTS GGTIPDRGLF AVMTPASESK PGSRVGELDE EMVYESRVGD TFLLGTSSWR
601 VEDITHDRVV VVPAPGQPAR MPFWKGDAPG RPLELGRALG RFLREVSALP EPEAVGRAAA
661 AGLDEWATAN LLTYLKEQRE ATGHVPSDRA VLVERFRDEL GDWRLVVHSP FGAQVNAPWA
721 LAIGARLRER RGVDAQVAHS DDGIVVRLPD AVDAEGGQAV AGAEDVLLDP DEVEQVVVAE
781 VGGSALFAAR FRECAARSLL LPRRDPRRRT PLWQQRQRAA QLLSVASKYE SFPVVLEAMR
841 ECLQDVYDVP GLRELMADVR ARRVRVVEVE TPSPSPFARS LLFGYVGMFL YEADTPLAER
901 RAAALSLDSA LLAELLGSEA IRELLDPEVL EEVERALQRL APDRHARDAE GAADLLRFLG
961 DLSEEEAAER GVRPEWLTEL VAARRAIRVR IAGHERVITI EDAGRVRDAL GVALPVGVPE
1021 VFTEPVADPL GDLLGRYART HGPFPAGQAA ERFGLGVAVV TGVLERMAAT GRLVRGELRP
1081 GGTHTEYCDA EVLRRLRRSS LARLRSEVEP VEPAALGRFL PGWHGVGRRV RGAPTADDVY
1141 AVVEQLAGAP LPASAVESLL LPARLPGYHP ALLDELTAAG EVTWTGCGAL AGGDGWVALA
1201 PTDVADLLLP DLVPESAPES PLHTAVVEAL AGGALFFRQV VDRVALQGPT TDQEVVGALW
1261 DLVWAGLVTN DTLAPLRALV SGGGAHKPKR TTPRGRYARM RATRPDMPSR TGPPTVAGRW
1321 SLAVVPSPDP TRRAHARAEA FLERHGVLTR GALDTERVTG GFSAVYRVLR AMEESGQVVR
1381 GYVVEGLGAA QFAARGAVDR LRALSAPPDR TGSEWAGPEP NWSAGSAGSA GSVGSAGSAG
1441 SVGSAGSAGS VGSAGSAGFS GPAGFTGSAE WGGPVRSAGS AGSGPTTVVL AAADPAQPYG
1501 AALSWPEQVG GGKHRPGRKA GALAVLVDGE AVLYVERGGK SLLSFTEEDE PLRAAAQGLG
1561 RAVRDGWLGQ LSVQRADGEV ALGSKLAGVL QEAGFRATPK GLRLRA
//