LOCUS ACU35084.1 1651 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 NAD-glutamate dehydrogenase protein.
ACCESSION CP001630-1110
PROTEIN_ID ACU35084.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_1129"
/inference="protein motif:PFAM:PF05088"
/note="PFAM: NAD-glutamate dehydrogenase; KEGG:
pol:Bpro_3020 glutamate dehydrogenase (NAD)"
/transl_table=11
/db_xref="InterPro:IPR007780"
BEGIN
1 MTSTGFPTRS ERAAHAAGGA ARAASPEHTR DELIGRAAEN APELAELIRL YYRHVPAEEV
61 NDDDPADLLG AVRSNHRLAE SRVAGRPTVR VLNPTRERDG WQCPATVVQI VTDDMPYLVD
121 SVASELTRNG VQVQRVIHPI VVVRRDQADG SLVEVLPTAD PADPPQGAAA ESWMHIEVDL
181 LTDADRAHEL EAGLRSVLND VREVVEDTDR MVTTARELAK SLRGDGLPLP EHEVQDGARL
241 LEWLADEHFT FLGYRRYEVA RDGGEPVLRP SGEAGLGVLR QDSPAAHALT AGPDAGTPTP
301 ELLVLTQASA QASVHRSVYP YYVGVRTFDA EGRVDGEHRF LGVLSTTALH EDVLDIPVIE
361 RRVRDVIHSA GFPLHSYSGQ RMLEVIQNYP RTELFSVNAE TLHLTVTGVI ALAERRRLRL
421 FLRRDPYGRF YSCLVYLPRD RYTTTSRLAM QEVLIDELGG VNLEYSARIG ESALARVHFT
481 VHTDPAADQG ATPDTGLIQQ RLAEAVRSWD DRMVEAVLAE TARSNELGAE SAGEQGQRIA
541 GAFPEAYKED FTATEGLADF RRIEALGQGD LDMVFYVPRD AEPGERRFKL FLAGARVTLS
601 DVLPMLQRMG VVVVDERPYD LVRDDGVECW IYDFGLRLDP ATLEKLTDED LDSVRVRFQD
661 AFAAAWRGES EVDGFNTLVL RGGLTWQQAA MLRAYAKYLR QAGVSYSQDY IEDAVLGHTQ
721 VATALVELFE TRFDPALDAP ARTERTDRLS ARITELIDDV TSLDADRILR SLLTLVLATL
781 RTNYFVRDAD GAPRPYLAVK LNPRAIPELP QPRPRFEIFV YSPRIEGVHL RFGPVARGGL
841 RWSDRREDFR TEVLGLVKAQ AVKNAVIVPV GAKGGFVVKR PPAPTGDAGQ DREAFLAEGI
901 ACYRQFISGL LDLTDNLKAG VTVPAPQVVR HDGDDSYLVV AADKGTASFS DIANEVSRSY
961 GFWLGDAFAS GGSVGYDHKA MGITAKGAWE SVKRHFRELG TNTQTDEFTV VGVGDMSGDV
1021 FGNGMLLSEH IRLVAAFDHR HVFLDPNPVA ATSFAERSRL FALPRSSWDD YDRSLISEGG
1081 GVFPRTAKSI PVSEQVRVAL GLPEGTLKLS PQELMRAVLV APVDLLWNGG IGTYVKSSAE
1141 THGDVGDKAN DAIRVNGRDL RVKVVGEGGN LGLTQRGRIE FARTGGKVNT DALDNSAGVD
1201 CSDHEVNIKI LLDELVRQGA LDAGQRNELL GEMTDEVGQL VLADNYSQNA VLGVSRAHAA
1261 PMLSVHARLV TDLETRGVLD RGLEALPSQA EFKALEKAGE GLTSPELATL LAHVKLALKE
1321 EVLASDLPTM DSAARKLPDY FPSQLRARFG DAIPDHPLSR EIITTVLVNE VVDGGGISYA
1381 FRLAEEMSAS TTDAVRAYTA VTSIYDLPSL WRSIRELDNA VPSEVLDDML LETRRLLDRA
1441 SRWLLTNRPQ PLAISAAISR FRGVVERITP RMVDLVKGRE QESVLANVDR LVGHGVPQEL
1501 ATRISTLLFT YGLLDVTEIA ELAEHEDLGA SAGAERSHEE TAELYFAMSD HLDIDRMLSS
1561 VSSLERENRW HALARLALRD DFYSSLRAIT VDVLRTSDPE DSGEQKIAAW EQANASRLGR
1621 ARAALEEINR ANRLDLATLS VAARQVRSMV R
//