LOCUS ACU34866.1 1094 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 lysyl-tRNA synthetase protein.
ACCESSION CP001630-892
PROTEIN_ID ACU34866.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_0906"
/EC_number="6.1.1.6"
/inference="protein motif:TFAM:TIGR00499"
/note="KEGG: mgm:Mmc1_1032 lysyl-tRNA synthetase; TIGRFAM:
lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K
and N); protein of unknown function DUF472; protein of
unknown function DUF471; protein of unknown function
DUF470; nucleic acid binding OB-fold tRNA/helicase-type"
/transl_table=11
/db_xref="InterPro:IPR002313"
/db_xref="InterPro:IPR004364"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR006195"
/db_xref="InterPro:IPR007424"
/db_xref="InterPro:IPR007425"
/db_xref="InterPro:IPR007426"
BEGIN
1 MAVAGWKWRA AGVVATVVQV SALASLVLLL WAEGTTLGDV IFFSGYALGL PVEANLFIVL
61 VLVVLGAALR ARKRAALWAL LLTEALGLAW NLAVLLLLAV APDVPASGEQ VDWRRALGFL
121 GGGALTALVI IAFLLAIREA FPAELAPGAW RKALAAFIVG LAAAATAGFL LTEVFPGSLR
181 DQGEMLVWAA NQVSGEVVPL RRALSGEGPA WLSVLLGVTG TLVAIFALYL FFRGERSSRW
241 INVDEELTLR RLLAAHGEPD SLGYFATRRD KSAVLSPDGR AALTYRVLAG TTLASGDPVG
301 DEDSWRQAVR AWLDEARRYG WRAGVLGASE RGARAYAAEG LKALEIGDEA VLDVREFSLA
361 GPERRAVRQA VSRVERAGYT ARVRRHAEIP ADEMAGLLDL AQRWRGAQTE RGFSMALGRL
421 GDESDGRCAM VEAYDADGAL RGLLSFVPWG RRGLSLDLMR RDRTAENGLN EFMVAELVAA
481 AGRLGVQRVS LNFAMFRAVF EEGEKLGAGP VLRAWRGVLG LASRFLQLES LYRSNAKYGP
541 DWQPRYLCYS GVRSLPRVSV AAGVAEGFVP NLRSLLKRGS RRRGLDGATT SGRWFADAVR
601 EIEATRPEPA RARRPEQVRV RMAKLDLLRA AGRDPYPVGY DRDCPVAEVE SRFGQVVAIT
661 GRVVALRELG GLCFARVRDW TGEVQVMLDA ATTEDLHLWK SGVDLGDHVG ARGEVVRSRR
721 GELSVLVADW AITAKCLHPL PDRRAGLADP EARVRKRYLD LAVNPDSAAM LRTRSAVVRA
781 VRDFLHDRGY LEVETPMLQT VHGGANARPF VTHINAYDTR MYLRIAPELY LKRLCVAGVD
841 RVFELNRNFR NEGADATHNP EFTMLEAYQA YADYRVMLDL VRELVQHAAV AAHGRQVAVR
901 DGAEVDISGE WPVVPVHAAV STALGVQVGP DLPLDELRAA LVAGGVPLPE DLEADHGTLV
961 LRAYDHLVEP ATTAPTFYTD FPTSVSPLTR EHRADPRLAE RWDLVAFGAE VGTAYSELTD
1021 PVEQRRRLEA QSLKAASGDV EAMELDEDFL AALEHGMAPT GGLGLGVDRL LMMLTGASIR
1081 QTVLFPFVRP GPKS
//