LOCUS ACU34830.1 1354 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 conserved hypothetical protein
protein.
ACCESSION CP001630-856
PROTEIN_ID ACU34830.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_0869"
/inference="similar to AA sequence:KEGG:sce2125"
/note="KEGG: scl:sce2125 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR013496"
BEGIN
1 MSDRWRLHRG GIVNIWQYAE QVFDFSGGRA IFQGTNGSGK SRTLELLLPL CLDGDLRQVG
61 SKGFDTVSLR RLMLDDYDGG PNRIGYAWVE LRRGEDEYLT CGLGVKASKT SQAITDSWRF
121 ITPLRVGRQL QLVGAERTPL GPAHLREAIG ADCVLEEAAF RARVAEEVYG VPAARYGDLL
181 HLQRTLRNPD VGLKVLEGQL EQILSDALPP LDQAMVEQLA TSFDDLESIR ENITRLSTAD
241 SALGTFLKTY SDYALGGLRS SAERLGAAED GVRKLEREGA RLTAALERTR AERADAERSQ
301 SDLEAGEQRA EERIGALKEL PAFRGLEDLR TRERLVEEKR SSARVALEVA AKQRAQEDGA
361 VDGVLRLLRR LAEDLGTARE LAEPLRGRLL AAGLELELPQ VPPVASAEPV VRAESVRAKP
421 DPEAEPQPIE RRVPPAAPVV PVEAAADRVA EVAAEAGRRG ALVLALHQRS VELDSAARAL
481 ESLEGAVGDA ARAASEAVAR RDREAGELAG TGREWLGAVA AWRDAEPFAG VALRLPEAVD
541 PARARALAAK ARDGARPLVS AAREAERGAA DRVAGLRASI DERDVELTGL RGGSERAPDA
601 ARFTGGGRDS GAGAPFYRLV DFRAGVDDAG RAGLEASLEA SGLLDAWVPG DPALAAVDGA
661 RSEVFAVPGE AVGGASLADV LEPAVEPGSP VSAELVGALL ASVSLASVSL ASPAGTPGSG
721 AVSADVDGGW RAGVLVGRWG KPAAEFIGAG AREGARRRRI AELEERLAGL REELGAAEAE
781 AVAAREQVRR WESHLERFPA DRDLVARHGR VQAAQEGAER AGRRVGELEE ELGRARARDA
841 AARAEVVQEA AAAGLVAETE ALRQAQQAAS DAQRTADRLA DVLRRQCGGT LADLADAAHR
901 YRVAEQDRVA AEQDAEERCS DYAAQAATLT ELAGAVGGEA RKVADQLAAL EAGRRTTRED
961 LREMREQVAE AREKAAKLEA QLDASAEQLA GAREGAGRAE EQFLAAVRAP GVLVAALPDA
1021 GPEWEPARVR EALAGIDRRG AGEATVITKL QALQTSLAGS HDIAAEQHAG LLTVTVTGEE
1081 GARPVALAAR QVTARLAEQR GFLDERYQTI FADYLIRDLA EWLRGQVAVA EDLCRRMNEV
1141 LGKARSSQGV HVKLAWKPSA ALDEGTRDAL ALVRLPYAER DPEQDATLRR VFTERIEQER
1201 DAHSGSYAEV LSRALDYRTW HQFTVTVADT GPDGGPRERR LRQLSSGETR LISYVTLFAA
1261 GAAFYDAVSG EFSPLRLVLL DEAFERLDDP TIARMLGLLV DLDMDWVITW PSGWGVSDKI
1321 PRMHIYDVLR PKNGRGVACT QTTWDGAGLD RVDP
//