LOCUS ACU34597.1 1001 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 UvrD/REP helicase protein.
ACCESSION CP001630-623
PROTEIN_ID ACU34597.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_0634"
/inference="protein motif:PFAM:PF00580"
/note="PFAM: UvrD/REP helicase; KEGG: scl:sce3530
ATP-dependent DNA helicase"
/transl_table=11
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
BEGIN
1 MRFVADLHIH SKYSRACSRD CDLEHLTWWA RRKGISLVGT GDFTHPAWYD HLRENLVDAE
61 PGLFRLRDDL DREIDRKLPP SLAASPVRFT LSVEISTIYK RGDRTRKVHH LVYMPDLDAA
121 AEFNRRLGKI GNLGSDGRPI LGLDSRDLLE ITLECGGYLV PAHLWTPWFA VLGSKSGFDA
181 VEDCYVDLAD HVFAVETGLS SDPEMNWRIS GLDKYRLVSN SDAHSPPMLG REATVFDTEL
241 DYYAVRRALE TGVGHAGTLE FFPEEGKYHV DGHRKCDVRM EPAETRAHRG LCPECGKPLT
301 VGVLSRVEEL ADRPDGFRPE GVAGFTSLVP LPEIVSELLG TGPKSKKVLG EIDKLTAAFG
361 PELRILQDVP LPDLSAHSEL LGEAITRLRR GEVVRDAGYD GEYGVIKLFQ PGELAKRSAA
421 PALFEDLVAE PAEAKPRRAP AAQPQDVPEA DATAETTAAP TPTPATGLLA GLDPDQRAAA
481 GVEGGPLLII AGPGTGKTRT LTHRLAHLVV ERGVPPEQCL AITFTRRAAE EMTERMAALA
541 PAHAPAMTIT TFHALGVLVL REQHDRVGLS RSFGIADPDQ QLAVALSVAA DEKAAKELLA
601 TAHPAYKDAL RAQDLVDFDD LITLPLALLE DDADLAASYR DRWRWVSVDE YQDVDEQQYR
661 LLRQLAPSDG NLTAIGDPDQ AIYRFRGADV GFFLRFREDF PAARTAHLTR NYRSSAPVVT
721 GALQVVAPTT LVPGRELRPF GEHGDALIGV HHAASEQAEA VFVSRTVEQL LGGATFHAFD
781 SGRVDSDGAR DLGFSDFAVL YRTDRQSRAV VDALTASGMP FQKRSHDRLA DRPGVERIVR
841 ELRFAAGETV LDRVRAVAGE DHTAYELLKP LAGDCGADFE RFHSELALGV EVDTWDPRAD
901 RISLLTLHAS KGLEFPVVFV VGCEDGLLPL RWPGADPVPD EVAEERRLLF VGMTRAQRHL
961 FLSHSTGRPR SPFLNQLDGV FEQVGDARPA RKKKETQFSL F
//