LOCUS ACU34425.1 1092 aa PRT BCT 24-DEC-2013
DEFINITION Actinosynnema mirum DSM 43827 putative sensor with HAMP
domain protein.
ACCESSION CP001630-451
PROTEIN_ID ACU34425.1
SOURCE Actinosynnema mirum DSM 43827
ORGANISM Actinosynnema mirum DSM 43827
Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
Actinosynnema.
REFERENCE 1 (bases 1 to 8248144)
AUTHORS Land,M., Lapidus,A., Mayilraj,S., Chen,F., Copeland,A., Del
Rio,T.G., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Chertkov,O.,
Bruce,D., Goodwin,L., Pitluck,S., Rohde,M., Goker,M., Pati,A.,
Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jeffries,C.C., Brettin,T., Detter,J.C., Han,C.,
Chain,P., Tindall,B.J., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Actinosynnema mirum type strain (101)
JOURNAL Stand Genomic Sci 1 (1), 46-53 (2009)
PUBMED 21304636
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Actinosynnema mirum DSM 43827
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 8248144)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C.,
Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082379
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Actinosynnema mirum 101, DSM 43827
Culture Collection ID :: DSM 43827, ATCC 29888, NBRC 14064
GOLD Stamp ID :: Gc01024
Funding Program :: DOE-GEBA 2007
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 8.9x Sanger; 20x pyrosequence
Gene Calling Method :: Prodigal
Isolation Site :: "Blade of grass from Raritan River NJ,
USA"
Collection Date :: September 1976
Isolation Country :: USA
Latitude :: 40.491816
Longitude :: -74.322087
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Sporulating
Temperature Range :: Mesophile
Temperature Optimum :: 10-30C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Nocardicin A producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Actinosynnema mirum DSM 43827"
/mol_type="genomic DNA"
/strain="DSM 43827"
/type_material="type strain of Actinosynnema mirum"
/db_xref="taxon:446462"
protein /locus_tag="Amir_0458"
/inference="protein motif:PFAM:PF02518"
/note="PFAM: ATP-binding region ATPase domain protein;
histidine kinase HAMP region domain protein; Nitrate and
nitrite sensing domain protein; SMART: ATP-binding region
ATPase domain protein; KEGG: mag:amb3383 methyl-accepting
chemotaxis protein"
/transl_table=11
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR013587"
BEGIN
1 MGDGLAALRD GTVTESTGTG LTTGVRQGEA RTASWRLQNW RLPTKLGAVL LIPTVAALAL
61 GGLRVQSDLA NATQFSRLAN QVQLETAVAD LVHQLQRERD LSTWYVASSK QIESVALDRQ
121 LVRVSDAVET LKSKIIDLSG DLAPETVERF RGTAEQLTRL NSLRSAVRET QYPSDAVLRV
181 YSESVESLLD LGEQAIGGID DPELARLHLA TNAMARIKEQ ESQKRGILFD VFQRGSFAAN
241 QERALLAVNA ELDAARNDFR KSATPDQAKI YDDTVTGLII DTANNMQETA LNLAGTTSGF
301 GDISPKGWDV SSTLTVNKTR QVEVMLIEQL QRLSDERTGE ARAAAFYDSG VVLGALLMAL
361 VMALFVARSI LNPLRLLRRT ALDVADKGLP EAVEKILADP NPQEAAKTAI APVPITTREE
421 VGQVARAFDA VHGEAVRLAA EQAMLRDNVN AMFVNLSRRS QALVERQLNL IDRLEQDEQD
481 PDQLASLFEL DHLATRMRRN SENLLMLSGT DLSRRLTRPV PVAEVLGAAV SEVEQYARVQ
541 VGQTPELTVQ GRAVNDLVHL IAELLDNATA FSDPVTKVTV RTARTRKGEL AIEIQDRGVG
601 MSDQDLRDAN ERLANPPDVD VAVSRRMGLY VVARLAKRHD VKVRLRGNED IEGGTTALVT
661 VPEALVTSAG QTAHPMGADL IGSPSAPAPS AFPSPNTAQR ASGIAGAFGG GNGTAGVTSR
721 HDEESSYPAV SFMSTDVDAD ATRAPYRAEV PQETSAEISQ ASWLPMVEEQ PPAVARDAQN
781 EPTGTFGSPT LFTAYEDRDA PQADHEHGYQ TTQFPAVDDS ANAFAPFAAP LPEPEPEPEP
841 EPEPEPVVFQ RSSAPRASAP ARPVVDDTPT ERLPIYEAVL SQWFQSVGSE TSAATTQAVP
901 PAPAAPAPRP ARQDVQPEPQ REEAPLPTRK PRPVSEQAQE AAAPSSAIEN GLPKRQPGSQ
961 SNMSKRTLET SRVSEPEAVQ AEPAAKASPA SVWQSPADEG WQAAQSLLSS TPDATTQAGL
1021 PKRKPKAQLV PGSAAPLAGA TQQPQQPPLP PRSADVIRGR MSSLQQGVRR GRHALIDAYA
1081 GDMSSRQDEE QE
//