LOCUS ACU06287.1 1221 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 hypothetical protein protein.
ACCESSION CP001681-4061
PROTEIN_ID ACU06287.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_4096"
/transl_table=11
BEGIN
1 MNMKTLYMLC VLLMLSGAAQ HSFAQKKNGL PHDTKFSGYP TRNPDFDVRP GFGNPPKGYG
61 NVPFFWWNGD TLSRARLTEQ LDILKQSSTD GFAISYLHTD PRGADAELNK KLGYGLYGRT
121 EHGNPAVYSD EWWKTWNWFS GEAAKRGLAA GLDDYTIGWV GNGYSTDEVR DLERFKSYKG
181 ALVIKIDTIA AGTSLKKAVP PDLISLTAWP VTGRAAFIDL KGKVKNGSIE FKAPNNGNWK
241 IYTIVASNNY MLHPDHGKEL VKHYFQRFED KMDAQGRKGM NYFFQDELFI PFDMNTWSED
301 FAEQFSRIKG YDVLPYLPAL KENIGAITPK IRMDYADVLI ELAEERYFKP IYNWHASRGL
361 IYGSDNLDRG LEPLNYVDYF RIESWYTAPG NDAPARGSSF LQTKVSSSVA HLYKRPRTWL
421 EAFHSMGWGS SGEWLAEQLD HHFIAGGNLI CMHGLYYTTH GGWWEWAPPD FHYRMPYWPH
481 MKKWLEYGER LSYLMSQGIH VSDIALMYPT EPMQAFPGSR PDISFATART LSNAGLDYDF
541 MDYRSLLKTE ISDKSLKVSD MSFKVLILPD MKAMHHEALQ QALNFYRKGG IVVATGALPM
601 ASTRKGSNDP EVDAIVKEIF GLTARELEAG KKAEIHQNAA GGKGLLADTL NIATVLAQHI
661 TPDFIPGEGG GKVLHRRVGN KEVYMTMNVK PGNEVFYRAL GRAELWDAKT GETKVLPVVK
721 QTAAGTYIRS DAGYTNSSLI VFSPGEPLIE SKKTSDAVAL EKIPVTGNWK IEFLPTMNNK
781 WGDFRLPAFD GMIGTEARTF KFSTKANAAK DWTAAAFNDN SWKEGIYDYS YQMQWLLDSA
841 SNNFDALIGQ ALDGKLDSWK PYRFSWRFGV WDHPGPQGYH GLKAKVNDGF LILDGAGDHL
901 FKTYVYAPQE QLYHVELGER VPDRFYVDGK ALTGTEIKLN KGWHAVLAAY AKVPKKGYKT
961 GPNSRDERPR SAIVFLPAAN PLPEKVDPYS KILAMRWYQV PHLMFDPDKG ENKAYCYRFK
1021 SAPGLEKMEM GIYGKNLAVW IDGQPLDKKY IQLLKAESGL NTYQVNLPEK KAQIAEVAMQ
1081 IETETGIQDV AAFPFPVKLF CRSGLLEAGD WSLTGQMKHY SGGLYYRKTL SFSAEQLKNK
1141 VSLDLGEVVA TCAVKINGQD AVTMMSKPYK TEITKFLKAG TNEVEVLVYS TLSNHYQTIP
1201 SAYRGNPRAG LIGPVAIEIQ K
//