LOCUS ACU06066.1 937 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor plug protein. ACCESSION CP001681-3840 PROTEIN_ID ACU06066.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_3875" /note="PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain" /transl_table=11 BEGIN 1 MNFQLNRIFL LMGLALPLSV IAQVNDSTKL SDSLKNINEK VSVAYGRQNK DQVTSAMASV 61 SGNELRTTHT ASLSNSLIGR LTGVSILNNG GAPGFDDPSF AIRGMHTTAN NGYLVLVDGI 121 QINSLSYIAV DEIESVTVLK DAAALAMYGV RGGNGALLVT TKRGKVSDKI NISFNARYGL 181 QSPVLLPEFA NSYDYARLHN VARTNDGLPP IYTEKQLNGY KEGTDPYLYP SVNWYGEILR 241 KNAVLQDYAL TFNGGNDKVK YFLMVGYMAN EGLYANTNQE TNSNINFKRI NFRGNIDLNI 301 TKNLSAAIGL GGNIQDRMFP TISTEDLWKS MASYAPNLYS VRSPDGQITG SANYPINPVG 361 YLLEKGYFSR HDRNIQSSVR VNQKLDVLTR GLSVFGSLLF DNEFNNRYDK TRDYAYAEPI 421 VGTNTDGEPY VYYLQRGLNT DLTVRTDPNY ENNRVILQAG FDYNRKFNNS ELSGMLMYQQ 481 DKYTVLGNQS AFAMQNLAGR FNYGFKDKYF AEFSFSYSGI ENYAPGKRFG FFPALSGGWL 541 IHKEGFWKEN SAINYLKLRA SAGLVGNDKG SPRFNYNQYW GTQTGQGYYF GTGTSFYNAL 601 VQLGTANPDI TWEKGMIYNL GIEAKAFNSK LSFGADIYRE MRSDILVDMG NATPAMSGIA 661 DGMRQNKGKV LSYGTELFTM FNDRVGAVDY YIGGQFSFAR NKVKANYDIP RKEAYSSRLN 721 RPVGQFFGLE AIGFFKNESD IISSPQQTFS VVRPGDLKYK DQNNDGIIDV NDEVAVGRHI 781 YPEITYAFNT GIGYKGFNLD FFFQGVAHRS VLLSGAMFQP FVNNNNIIKW ASEGYWTPEN 841 PNSATFPRLT TEVSANNYRT SDFWVRSANF LRLRNVELGY TLPKSVTAKL RLQSVKVFVS 901 GLNLLTWDDL DVNVDPETLS AGYPNIKTYT AGLSVKF //