LOCUS ACU05870.1 960 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 glycine dehydrogenase protein. ACCESSION CP001681-3644 PROTEIN_ID ACU05870.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_3679" /note="PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating)" /transl_table=11 BEGIN 1 MSLDIHYKED FKNRHIAPNT QDTNAMLHTI GLGSVEELIE QTVPQKIRLK QPLDLPKAKS 61 ETDYLAALKQ TASLNKVFKS YIGQGYYDTI TPGVILRNVM ENPGWYTQYT PYQAEIAQGR 121 LQALLNFQTM VIDLTGMEIA NASLLDEGTA AAEAMFMQYS LKKNQQATKF FVSELLFPQT 181 IDILKTRANP YGIELVIGDH QSFELNEDFF GAIIQYPAGN GEVFDYTGFA QKAHDKNVKV 241 TVVADLLSLT LLTPPGEWGA DVVVGTTQRF GVPMGFGGPH AAYFATKDEY KRAIPGRIIG 301 VTIDSNNNYA LRMALQTREQ HIRRDKATSN ICTAQALLAI MAGFYAVYHG PKGLKLIAER 361 THGLAVTLAK SLEKIGYKQL NKAYFDTIQL DLGNLADSIH RECIDNEINL HYKASIVTIA 421 LDETTSFEDI KLLTRIFSKV KAIAADAVEL ADDKNLVTVI PAALQRKSTY LTHPIFNAHH 481 SEHEMLRYIK SLETKDLSLC HSMIALGSCT MKLNATTEMI PVTWPEFGKI HPFAPADQVL 541 GYYTIFNELD KWLSEITGFA AMSLQPNAGA QGEYAGLMVI RAYHNDRGDA HRNIALIPSS 601 AHGTNPASAA MAGMKIIIVK SLENGNIDVD DLKAKAEEHA ANLSCLMVTY PSTHGVFEES 661 IVDICNIIHA NGGQVYMDGA NMNAQVGLTS PGNIGADVCH LNLHKTFCIP HGGGGPGMGP 721 IGVAKHLVPY LPGHAVVDIN NEKSIHAVSS APWGSASILV ISHAYIAMMG TDGLTNATRY 781 AILNANYMKA RLEQHYPVLY SGANGRCAHE MILDCRGFKS YGIEVVDIAK RLMDYGFHAP 841 TVSFPVAGTL MIEPTESEPK HELDRFCDAL IAIRKEVAAV EHGELDKTDN PLKNAPHTAA 901 IVTGDEWDHA YSRQTAAFPL PYVAAYKFWP SVGRVNDSYG DRSLVCACPP IESYMEEPVA //