LOCUS ACU05824.1 1010 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor protein. ACCESSION CP001681-3598 PROTEIN_ID ACU05824.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_3633" /note="PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain" /transl_table=11 BEGIN 1 MKRIFTKLSV LTFLCFLFTS VTQAQDLTVT GVVTDLADKL PLPGVSVQVK GTQKGTTTDA 61 MGKYAISAPA NATLVFTSIG YTSREMQIGN QTTINVVLSS ASQDLEGVVV VGYGTQRKRD 121 LTGAITQIKG DEVAKMPNTN PLSSLQGKVA GLTVVNSGTP GAAPTVRIRG VNSTTSGGNN 181 PLYVVDGVHQ DNIDYINPAD IESIEVLKDP SSIAIFGLQG GNGVIVVTTK RAAKGQTTIN 241 LQSSAGVQKV LNTIDVTNAA QFIKLYNNLL ANSGLGSYDY TNYTADTDWQ KEILQSAFQS 301 NNNLSISNSG EKSTTLINLG YNTMEGVVKF GKYQRYVARV NEEIRINDNI KIGADITGTH 361 WILNNSSGDL NNALWAAPIV GIRESETAYY AMPGFQRGQV GNPVARIYQN DRNSINKGYR 421 VVGNLFADVT FLKKFKWRSQ FYTDLGFNNN RGYTGLPFTV IYLGEGNIPT TRFDNPNART 481 SVRQGADEFR KFQQDHTITY ENTFNNDHKV TAVAGFTSIF RSETKLSGDR TDIGLNIPDD 541 PAYWYIGIAD KSNPSGVTGS GEERASMGYF ARVNYAYKDR YLINATYRRD GLSSIAPQNR 601 WGNFGGIGLG WVLSEESFFK NIKGVDFLKL RGSWGTTGNG QGLPPNIFRP GVTTSGSGVF 661 GDNIYPGIAP AYIADPNLKW EVVRGLDLGM DLKALNSRLS AEINVYDRTT KDIITQITLL 721 NTSGSYPYRT NLGTISNKGI EVALGWNDKI GSDFTYNITP NFSYNKNEVV SIGNNINFLL 781 TGNGGANRTI TGESIGHFYG YKQIGIYQST ADLDKMARLS NSLPGDIAYQ DTDGDGKITP 841 ADRIKLGSPF PAWSYGLNLN LGYKGFDVLL QGQGVAGNKV YTQRRTATFA DLNFETNRLN 901 AWTGPGTSNV EPILQKGRLN NYLFSSYYLE PGDYFRLRTV QLGYTFKPAM LAKAGVKNLR 961 LYVSGQNIHT WTKTTGYSPE APISDVLGGG ADNGVYPIPA VYTFGINATF //