LOCUS ACU05787.1 1059 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor plug protein.
ACCESSION CP001681-3561
PROTEIN_ID ACU05787.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_3596"
/note="PFAM: TonB-dependent Receptor Plug Domain; TonB
dependent receptor"
/transl_table=11
BEGIN
1 MKPNLLFTML LVLGIPLAGL AQAVKTITGT VIDEKGGPLP GVKVVLQGKA TSGVTDGQGH
61 FSLSNTKEGD LLLVSMIGYT SKTVIVSSQN QYKIQLETSS TSLNDVVIIG YGEVKRKDLT
121 GAVGSVNIKD MEKAPVVSFE DALAGRVAGV QVGSGDGQPG SISNITIRGG NSITQSNSPL
181 YVIDGFPLES PDNNTINPDD IESIDILKDA SSTAIYGARG ANGVIMIKTK EGKVGAPVVT
241 YNNWLGYQYP GKQIEVMSPY EFVKYQLDLN KTSATALYLK DGKTLDAYRN EQGINWQDHV
301 MQNAFMQNHS FSMRGGTAAT KYSVSSSYLN QNGIVINGGY KRYQGRFQID QRVGQNIRIG
361 LNTNYTYGIK KGQIANLTSD NLNSSSAGNA SSYLMYSTWG YRPVTGSGDD GNFLDQPFDD
421 DVASNTDLRI NPVVNSNNMY QYAFNKSLSA NAFVEYSFLK YFKFKVSGGM TDTRLAFERF
481 NNSNTAAGNP RTVYGQNYGI NGSLENQNIR SLLNENLLTF NKTFNKKHRL DAVGGFTMQR
541 NSMEGDGFVS ILLPNEVLGV RGLGQGTILS KTTTGTYSTL VSFLSRVNYT FNSRYIFTAS
601 LRADGSSKFA PESRWAYFPS GAFAWNIGEE KFLKDIKAIS AAKLRLSYGI TGNNRVSDFA
661 YLPVLGMEVG ANTGNTKSGY YFNGQYIKGT VPIGVGNEDL KWEPTGSFDA GLDLSFFNQR
721 LSITADFYHK RTSDLLLNAS LPTSTGYLTA FKNIGVVVNK GFEFTLNTVN LSSKRFNWTS
781 SFNIAFNKNK IDELNGNQPS LITRVTSWNA NFNNSLPYIA LPGRQVALFY GYVFDGLYQL
841 NDFNVLSNGS YELKGEVPNN GSARSLIKPG FIKYKDINGD GIVDANDQTI IGNPNPLHIG
901 GLTNNFRYGQ FDLNVFLQWS YGNDILNANR IVFEGAEARP SLNMFKTYEN RWSVENQNSV
961 LPVAGGYGPN VFSDRNIEDG SFLRLKTVSL GYNLSPELMK RLKIQSVRIH VSAQNLVTWT
1021 NYSGLDPEVS VRHSSLTPGF DWSAYPRART ITFGMNLTF
//