LOCUS ACU05561.1 1033 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor plug protein.
ACCESSION CP001681-3335
PROTEIN_ID ACU05561.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_3367"
/note="PFAM: TonB dependent receptor; TonB-dependent
Receptor Plug Domain"
/transl_table=11
BEGIN
1 MKARAYLLLV FFLFPMWVCA QQQIVGKVVD VRGEPLPGVS VTAKADDGQK FNAITNSNGD
61 YDLRVSGGTK ELTYTYMGMM PVTELIKGRN TINVQLAEDS KELQNVVVTA LGIKREIKAL
121 SYSRQGVDVN TMTEAKSPNL LSTLSGKIAG LQIVPPGFNT GSARVVIRGN SSLTGNNQPL
181 FVVDGMPIDN TAGDGNIDYG NNAADINTED IENIEVLKGP NASALYGSRA ANGVILITTK
241 KGTTKFKVSL NSSLMMQRLT EFPEYQNAYG VGTSFYIDNT HRLPEAMVNY RSWGSPMMGQ
301 PYVALNGEIK PYLPQPDNIR DFYQSASLLT NNIAVEGGNT SSIYRISYTN YAGSSVVDGF
361 NLSNKQTGDV RLQNTFSKKV SLDSKISYVR DAVDNRQYSN ANGRNPTNLY THMGRSTDLA
421 ELMPYKDPLT GMEIGTHRNF SNPFWVINEN PNRDVKDRII ASLNPKVNFT NWLVFNGRLG
481 ADVLWWDGFE FNNIGSIVAS NPDGFMRTFN TKQQNFNLEG TLVANKTFNK FSVSTMLGAS
541 SFSSWFERRE QRINSLLQPG LINLSNAKEF PTVTQQQRDK RLNSVFGSVS LGYRGYAFVD
601 VTGRNDWSST LPRANNSYFY PSVGGSLIVN EILGLKSDIL SFAKLRASYA IVGNDTDPYR
661 LDQTYSFNGF LNGATLASLA TTMNNADLKP ERTTSFELGM DVRLFKNRVS IDGTYYNAAT
721 TNQIVTAQLP SSSGYLKRIY NAGKIKNWGY ELSGNAKVIA GKNFSWTTQL NYAANNSKVV
781 ELIEGIDRFQ LNNNSSYLYV YAEVGKPYAY LRGLGVARDA QGRMLIEDGG SLLVKDNDMA
841 FGTASPDWIG GIYNTFKFKN LDLGFLVDVK MGGVMYSGSI SRMLTNGVLA ETLYGRDDYY
901 KHTVIFGENN TELSGGAIWD AYFADGTKNT KFVTPQNYEY ARPNYAEFVI YDASYVKLRE
961 VTVGYTLPVK LLSKMPVKTA RFSLSGRNLA ILYRRTPRGL DPEAMSTSGN GQGIENGALP
1021 PNAIYGLNIR LTF
//