LOCUS ACU04884.1 1458 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 heavy metal efflux pump,
CzcA family protein.
ACCESSION CP001681-2658
PROTEIN_ID ACU04884.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_2683"
/note="PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF
family; TIGRFAM: heavy metal efflux pump
(cobalt-zinc-cadmium)"
/transl_table=11
BEGIN
1 MFNRIILFSI KNKLAIGIMT LALVVWGIYS LTQLPIDAVP DITNNQVQII SQAPSLGAQE
61 VEQFITAPIE LGMANIPNVI EKRSISRSGI SVITIVFEDD TDIYWARQQV AAQLKEAENN
121 IPAGLAEPTL APITTGLGEI YQYVLHTKKG YEDQYTATDL RTLQDWVVRT QLAGTKGVAE
181 VSGWGGYVKQ YEIALDNEKL NASNVTISQI YAALKNNNEN TGGSYIEQQS NAYTIRGIGQ
241 VKSLEDIEKI VVKNAGGVPL LIRDIGSVQF GSATRYGAVT RNGTGEVVAG ITLMLKGENF
301 NQVIKNVKER IAQIQKSLPE GVVIEPYIDR TELVGRSIST VQKNLIEGAL IVIFVLLLLL
361 GNWRAGLIVA SVIPLSMLFA FAMMRLFGVS GNLMSLGAID FGLIVDGAVI IVEAIIFRLT
421 ESKLFKGTLR LDQQQMDQEV FTASSKIRAS ATFGEIIILI VYLPLLSLVG IEGKMFKPMA
481 ETVVFAIVGA FILSLTYVPM ISALLLSKNT EHKRTISDRI VDGCKNIYKP LLEKALEFKK
541 IVVTIAMICF ACTLLLFSRM GGEFLPQLEE GDLAVEIAMS QGTSLTQVVE TFGKAEKILK
601 DKFPEVKQVV TRIGSAEIPT DPMPVERGDM MVAMLPKSEW TSAKTKEEMT EKMEAALSIL
661 PGVNIEITQP MQMRFNELMT GVRQDVAVKI YGEDLDVLAQ QAAKVAKLIA PVKGVSEPFV
721 EQVTGLPQVV VTYDRDKIAQ YGLTIGDINN ILKTAFAGDV AGVVFEGEKR FDMVVRLQRD
781 LRENISSIEN LYIPLPSGNK VPLNQVAKIE LKDAPAQISR EDGKRRIYVG FNVKGRDVER
841 TVAEIQQVLD ARLKLPPGYY LTYGGQFQNL KEAKNRLSVA VPVAMLLILG LLYFTFRSVS
901 QTILIFTAVP LSAIGGVLAL MLRGMPFSIS AGVGFIALFG VAVLNGIVLI SYFNQLKEEG
961 ITDVYKRVMQ GTAVRLRPVI MTAAVASLGF LPMALSGGAG AEVQKPLATV VIGGLLSATL
1021 LTLFVLPCLY ILVTDRKKIQ NNIMKPLVII FLLFGGLAFT NQAKAQQAPL SADSAVALAL
1081 KNNLQLKSAG LSVSQSKARQ KTAFDPSKTA FTISQDPTGG GSNDNSISVS QNFAWPGFYK
1141 NQKRVLSSET GLMEKSADYT RAEISRDTRL AYYHLLYSIN MLKVLELQDS IYKHFIRKSE
1201 LRYKVGETSN LELITARNKY QEVQALKKSA AANLATQQLN LQQLLNLNTG ILPSEKKLPI
1261 LTLTQDGTGT ENTAAGNLLN AVYQQQVEIA KAKVELERSR TMPDLTFGYA QQFVIKSFDP
1321 ANIGRTYTPG TRIAGLQLGI AVPLFNGAGR ARINNEKIAA QIAETDYQRI QNQLNTQYQQ
1381 EMQNYAQHKA MADYFTTEGL KQAEEQIRIA QVSYDLGEIG YIEFIQNMSL AVQSKLNYLQ
1441 TVNQLNQSVI QLQFLKGN
//