LOCUS ACU04797.1 3793 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 conserved repeat domain
protein protein.
ACCESSION CP001681-2571
PROTEIN_ID ACU04797.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_2593"
/note="PFAM: Domain of unknown function DUF11; PKD domain;
TIGRFAM: conserved repeat domain"
/transl_table=11
BEGIN
1 MLNTLRSNVL SCYRGICCLV FLLCSLFNLS NVLAEGSKDL YPVGASGNRA FLYSNAALGI
61 ISTSVAFPFR TLGTHYVYAV KNEYIAVASS AQGVGNGIII ITSPSGVQTM TTVGSTVGKI
121 SSRTEELAGP RFPGEGAGNN RYLPYSFQVG NDEGVWKIEF IPTGNKVDTN SPTASDVFAD
181 GTWSQSNNTP LISAWDVSVC NAVKDKWLRG RVYTNVLNLK LSQNFDDSNK AYNGINYVLT
241 KDGRAYRVKN NGNNGLGFTF FSNNKGFVDA TGNPLYKSLN TTDETVIANA VHDPRAVDDL
301 TKNLVTHKLF YGPPSPDLPV SAKVAIDGTT STTTWLKNEP TVPVVSNIDF VGSEGTVGQA
361 SQKGGTIIFK TNVAGSYRIT IPLGAGKDRV LNGAAANGVN TIKWDGKDGL GNLVPGGLVV
421 PEVRVRLASA EVHFPFIDME INPKGIIIEL TENSAFYPVN PTPNIIDESV YSDRVYWDDS
481 DITGGKAGEV SNPQVNVING ISSNSNGHKW GSYSGSSGSG NSGAGTNSYG NEKAMDTYAY
541 ILSKEEAQPL NVNVKVAELQ VVSVIPTYTS TAAGTQVTYA VKVKNAGVSD VTGAAFHFNV
601 PTGFTVNANG ISSSFTGATG AESNAVLDAT GFSSMLDLAN GCIVTYTING TIGAGISGND
661 ILVDASIMRP KDVTDPDATN IIFDKAPTNP HDECLNGTAN EVCNNIKYNT AHAQLVCVNS
721 SIVPIEYVLE AGGTDVQILP ALPAGLVKNI TGGKLTITGT PTASGIFTFT INTLGTQRST
781 KTVVLTVGSR AIASDIEVAD KAICIGQSAE LTSNLAAGST IVNPVFNWYS EAALTTLLHT
841 GTIYTVNPTV STTYYVTVKG DNSCENASGA GKAVTITVNP LPLQPTVTAS GGTTFCVGGS
901 VVLTSNAATS YQWYRGTTLL TGETNQTYTA SESGNYTVIV TDGNSCSSPA STAVTVTVNP
961 LPLQPTVNAS AGTTFCLGGS VTLTSSVAAS YQWYRGTTLL TGETNQTYTA SESGNYTVIV
1021 TDGNSCSSPA STAVTVTVNP LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL
1081 TGETNQTYTA SESGNYTVIV TDGNFCSSPA SAAVPVTVNP LPLQPTVTAS GGTTFCLGGS
1141 VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV TDGNSCSSPA SAAVPVTVNP
1201 LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV
1261 TDGNSCSSPA STAVTVTVNP LPLQPTVTAS GGTTFCLGGS VVLTSSAATS YQWYRGTTLL
1321 TGETNQTYTA SESGNYTVIV TDGNFCSSPA SAAVPVTVNP LPLQPTVTAS GGTTFCVGGS
1381 VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV TDGNSCSSPA STAVPVTVNP
1441 LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV
1501 TDGNSCSSPA STAVPVTVNP LPLQPTVTAS GGTTFCLGGS VTLTSSVAAS YQWYRGTTLL
1561 TGETNQTYTA SESGNYTVVV TDGNSCSSPA STAVTVTVNP LPLQPTVTAS GGTTFCLGGS
1621 VTLTSSAAAS YQWYRGTTLL TGETNQTYTA SESGNYTVIV TDGNSCSSPA SAAVPVTVNP
1681 LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVIV
1741 TDGNSCSSPA STAVPVTVNP LPLQPTVTAS GGTTFCLGGS VTLTSSVAAS YQWYRGTTLL
1801 TGETNQTYTA SESGNYTVVV TDGNSCSSPA STAVPVTVNP LPLQPTVTAS GGTTFCLGGS
1861 VTLTSSAAAS YQWYRGTTLL TGETNQTYTA SESGNYTVIV TDGNSCSSPA STAVPVTVNP
1921 LPLQPTVTAS AGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVIV
1981 TDGNFCSSPA SAAVPVTVNP LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL
2041 TGETNQTYTA SESGNYTVIV TDGNSCSSPA STAVPVTVNP LPLQPTVTAS GGTTFCLGGS
2101 VTLTSSVAAS YQWYRGTTLL TGETNQTYTA SESGNYTVIV TDGNSCSSPA STAVTVTVNP
2161 LPLQPTVTAS GGTTFCLGGS VTLTSSAAAS YQWYRGTTLL TGETNQTYTA SESGNYTVIV
2221 TDGNSCSSPA STAVPVTVNP LPLQPTVTAS GGTTFCLGGS VTLTSSAAAS YQWYRGTTLL
2281 TGETNQTYTA SESGNYTVVV TDGNSCSSPA SAAVPVTVNL LPLQPTVTAS AGTTFCLGGS
2341 VTLTSSVATS YQWYRGTTLL TGETNQTYTA TVTGNYTVVV TDGNSCSSPA STAVPVTVNP
2401 LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV
2461 TDGNSCSSPA STAVPVTVNP LPLQPTVNAS GGTTFCLGGS VTLTSSVAAS YQWYRGTTLL
2521 TGETNQTYTA SESGNYTVIV TDGNSCSSPA STAVTVTVNP LPLQPTVTAS GGTTFCVGGS
2581 VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVIV TDGNFCSSPA SAAVPVTVNP
2641 LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV
2701 TDGNSCSSPA SAAVPVTVNP LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL
2761 TGETNQTYTA SESGNYTVVV TDGNSCSSPA STAVTVTVNP LPLQPTVTAS GGTTFCVGGS
2821 VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVIV TDGNFCSSPA SAAVPVTVNP
2881 LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL TGETNQTYTA SESGNYTVVV
2941 TDGNSCSSPA SAAVPVTVNP LPLQPTVTAS GGTTFCVGGS VVLTSSAATS YQWYRGTTLL
3001 TGETNQTYTA SESGNYTVIV TDGNSCSSPA STVVPVTVNP LPLQPTVTAS GGTTFCLGGS
3061 VTLTSSVAAS YQWYRGTTLL TGETNQTYTA SESGNYTVVV TDGNSCSSPA SAAVPVTVNP
3121 LPLQPTVIAE SNTIFCIGGS VKLTSSASTG NQWYKDGNLI SGAVNKTYIA TATGSYFTIV
3181 TNANGCSSLP SQAIPVTVSP YPEIPDISPA GATTFCEGGI VTLTSSSANG NQWYKNGVLM
3241 PGATGKTLDV NQIGDYTVKV TNSTGCASNL SALTKVTVNR VPKGFDDNIN SLSCSQSSFS
3301 YNLQTKNVNN TLKGGNGVAA SFTWTVNSTV LGAINGSGKI LNATLINTST TEQTVVYIVT
3361 PIAETGGCAG QPFKITVRVP ACIDISISKT ADKNVVATVG DKINYTITIK NTGDANHNNV
3421 KVNDPLLGGM LSQPTGDNGN AILEKDETWT YRGTYTVTQN DLDLNGIPTG NTGKIINTAT
3481 VSSQAYPQSK SAIAEVDIHT NPSITLVKTG AMNRDFKTMT YTFNITNNGN VTLNNLVVRD
3541 PKIPQLIALK QTILAPGAST TGIAVYTITN EEKIAGTVSN TATVAGFTKT NVKVTDASGT
3601 AENNDEPTVI DITRYPIAID DYAKTKAEEE VAVPVINNDR PALFPLNAAT LEVKSQPVNG
3661 KLLVNKDGKV VYKPNKGFFG IEKFTYKVDD ANGLSSNVAI VTINVAPPDL DIPNTFTPNG
3721 DGKNDTFLIT GIENYDGVSL FVYNRWGDEV YKNNNYKNEW DGNGLNDGTY FYVLKLRTGN
3781 KEESKRSWVL IKR
//