LOCUS ACU04759.1 1054 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 hypothetical protein protein.
ACCESSION CP001681-2533
PROTEIN_ID ACU04759.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_2555"
/transl_table=11
BEGIN
1 MKFKTLTAIV FISALVLILG FQLGGRKLKA DGFEVLKKAF KNPGNEYGTT PFWVWNTKVS
61 GEMIDSMMLD YKKNDFGGVI VHARPGLITE YLSDEWFSLF EYAQQKGKQL GLKVWIYDEN
121 SYPTGFGGGL VPDQMPESYN QGQMLYMSEV TAIPGNLEEV LIVLREDKGQ FTDISLSLAA
181 EKGKAGKYRI FKKVNYQKSN RGTVAGPIGS SYVDLMAKGV TQKFMDITFK GYEKVAGHEF
241 GKTVPGIFSD EPTIINEGKD CVRWTPDLFA HFKEKWGYDL RLQLPSLFEE TGNWKKVRHN
301 YYQTLLQLFI DRWSKPMFNY TEQHNLIWTG HYWEHGWPSP YHGPDNMTMY AWHQMPGIDM
361 LFNQYNEDKP VQFGNIRAVK ELGSVANQLG KKRTLSETYG GGGWELTFKD MKRLGDWEFV
421 LGVNFMNQHL SFMSITGARK YDYPPSFSYH EPWWPFYKTL NQYFSRLSLC LSTGQQKNDV
481 LVLEPTTSAW MYYFRGKENK RFFEIGKNFN DFVTTLQRAH VEYDLGCENI IKDQGKIESG
541 KFVIGQRAYS TVVIPPGMDN IDRPTFNLLK EYARQGGKVI LFEKLSCLDG DANDALDFFT
601 AAKSNVLLAV GAAEQQIIQN HLLPADIRIS AVGNNRIGGN LYYQRRQLAD GQLIFLSNAS
661 MEAASKGMVT VNGKDALMMD LFSGGIYDYP EKESSGKLSF KFDIPAAGSM MFFVADKKQT
721 GFKAPALNRA ETLVKTSQSK VLRPAENTLM IDFCDLELKK PDTAYRDLHV GIASNTAFKH
781 FGFKDGVGNP WNNRTQFKDR IVARDTFSVG TGYMATYRFE IAQNVNLKNF RAVVEQPGLW
841 NSVSVNGTKV KALKGKWWLD RSFGVFEIGN YLKPGKNSIS LAVSPMRVYA EIEPVYILGD
901 FNLVPAVKGW EITAAAPLTF GPWNKQGLPL YGQGISYVKE FQVQTMGKEY AVKLKKWKGT
961 VAAVKVNHVL AGIISSEPDE LNITPYLKKG LNHVEIEVIG SLKNLLGPHH NKPLPGLVDP
1021 GKWYNVKTYP SGNDYQTYGY GLEEDFDIHE IIPR
//