LOCUS ACU04109.1 1084 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 amidohydrolase protein. ACCESSION CP001681-1883 PROTEIN_ID ACU04109.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_1901" /note="PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; Amidohydrolase family; WD40-like Beta Propeller Repeat" /transl_table=11 BEGIN 1 MRTSLLLLIL VFSFFQSSFS QSPTPGPDKQ WDIEKYKGNT KTFTFNTDEG TWMNLDVSPD 61 GKDIVFDLLG DLYIMPISGG SAVLLSSGPA WDIQPRFSPN GRYISYTSDK SGADNIWIMN 121 RDGSGKRQIS KETFRLLNNA TWMPNSEYLI ARKHFTGTRS LGAGEMWMYS IYGGEGVQLT 181 KRKNDQQDAG EPNVSPDGKY LYFSEDMSPG PNFEYSKDPN GMIYAIRQLD LTSGKITSLI 241 AQPGGAARPQ VSPDGKMMAY VKRMRLKSVL VLQNLQTGEE WPIYEDLSHD QQETWAIFGV 301 YPNYAWTPDG KSIIFYARGK IKKIDLNSLF TNNLPFHVTG SQTIQQALHY QQQVFSNDFT 361 VKMIRQLNTS ADGKFVVFNA AGFLYKKDLP NGLPERVSKG IDFEFEPEIS ADGKSVIYTT 421 WSDEFKGAIK KTDLKSGKTV TLTTEKGFYY SPSFSNKGDK IVFRKGVGND VLGYAFGRGT 481 GIFTMPASGG PKTLITENGI RPKFNADDSR IYFQSSEDGK KAFKSIDLNG ANERTHYTST 541 YATQFAPSPD GKWMAFTELF NIYVTPMVTT GRPLDLSAGN KTIPLTRITK DAGTYIHWSH 601 DSNKLFWTLG EQYFSRDVKT AFNFTDGSTA QIKAPDSTGL AIGLKLKTDV PTGLTALTGA 661 RIITMKGDEV IENGAILIEN NKIVSIGKNL PLPANTRVID VTGKTIMPGM VDVHAHLRSS 721 PDGITPQQDW SYLANLAFGV TTSHDPSSNT EMVFSQSEMI KAGRLTGPRL YSTGSILYGA 781 DGDFKVVINS LDDALSNLRR LKAVGAFSVK SYNQPRRDQR QQIIEAARQL KMMVVPEGGS 841 TFFTNMNMIA DGHTGIEHSI PVAPVFKDVT TFWNKTEVAY TPTLIVSYGS QWGENYWYDR 901 TNVWENERLM AFTPRSIIDP RARRRTTSEY GDYGHIEVAK TARQIAEGGT KVNLGAHGQI 961 QGLGAHWELW MLAQGGMTPL QAIRCATING AAYLGMDKEI GSLEIGKLAD LIVMDANPLD 1021 DIRNSEKIKY VMINGRIFDS LSMNEIGNRE KVRGKLWFET GKGMVYTFPT GNAETWTYTI 1081 PNCE //