LOCUS ACU03339.1 1145 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor plug protein. ACCESSION CP001681-1113 PROTEIN_ID ACU03339.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_1121" /note="PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /transl_table=11 BEGIN 1 MKLITLLITI AFIHISIKGY GQITLNQKNA ALGKIFQTIE KQTGYVFLYT DKELTRIKID 61 IQVKNAPIEV TLKECFKNLP YTFKIVENNI LLKKEDDIVV LPETAAAGSE IQLQGTVSDD 121 KGAALPGATI RVEHSSIGTI AGLDGTFTLQ VPDAKVMLIF SYVGFVTKKV RLNGLARMEV 181 SLTEDAAAFA EIQVVGYGIQ KRANVVGAIS NINMKELRKA APSNLSNALG GRVPGIISRM 241 GDGTPGGVQN RFSNGNADDA QIYLRGRASM NNTSALVLID GVEGSLSRIN PEDIEQFSVL 301 KDASATAVYG VRGANGVILI TTRKGSIGAP KIGITSQIRM QKVLDFPNFL RSYDFAMLNN 361 EARKNQGLPE IYSAEDLEHY RTGDDPYGWP DVDWKEVLLK DQFYEQQYVG NVYGGTERVS 421 YYLSGEYNQS GGAFIENKEK NTQYRYRRYN LRTNFDFKIT KTTDLGVKLN GRLNDLHYPL 481 KGESSGQRVT GPGWSDITAR APLTAPVYNP NGTYANGGSD LPGNPVAEYM EGGFAQRLQS 541 GLESNFTLNQ KLDFVTPGLS FRGLFAANFG SGSAKALNSR SAEIWAYDKI TKTYTLMFGA 601 GIPTYTLGSN FSDFNRIQQV EAALNYDKAI GMNHKITAMG IATQTTKEAS FIVPTIFKGM 661 AGRLTYAYKD KYLAEGNVGY NGSDAFSKSK RYAFFPSGAL GWVASEESFI KDNVKFLDFL 721 KFRGSYGEVG NDRLGFGYSN LYIYSFRNPL AAETPGTSTT VNGYYSLGTT PNQILPILEG 781 TLGNPNVTWE VARKADIGVE AKLFKSRLSF EADVFLEKRN DILINRFDIP LISGLVPAKL 841 PALNAGKATN KGYELSLSYS DNIGGFGFTV GGNYTFVRNT IDYMAETPKK YPWQEQTGKQ 901 IGMLAPQFIW TGKFYSEEDL TNNAVPKPVA KVWAGELMFK DLNGDGKIDS DDKAYTGYGQ 961 IPEKIFGINL NMDYKNFYLN TFWQGASNVV INPTAGMRLE YAGYGYNVQE FHKEDRWVYD 1021 PSRGLDTRAT AKYPLLMLGG APQTRELSTF HVLNGEYLRL KAAEFGYTFP KTLITKLHIA 1081 DLRVFVSGSN LLTFSHLKRY HIDPEYLGNN IPGQMVAGQG EANGLGSGAW SPQNKFYAFG 1141 LNVTF //