LOCUS ACU03084.1 652 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 DNA gyrase, B subunit protein. ACCESSION CP001681-858 PROTEIN_ID ACU03084.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0862" /note="PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; Toprim domain; TIGRFAM: DNA gyrase, B subunit" /transl_table=11 BEGIN 1 MSEEKDPKSN YSADNIQVLE GLEAVRKRPS MYIGDTGIKG LHHLVYEVVD NSIDEALAGH 61 ADTIYVNILK DNSIRVEDNG RGIPTGINTK EQKSALEIVM TVLHAGGKFD KDTYKVSGGL 121 HGVGVSCVNA LSTHLKAEVH REGKIWVQEY NIGKPLYEVK SIGDTDKLGT IITFTPDPTI 181 FTQTTEYRYD TLASRLRELS FLNKGIKLTL TDERETLENG EFLSELFHSE GGLKEFVQFL 241 DGTRPSLIPE PIYVEGIKNG IPVELALQYN DSYSENVHSY VNNINTHEGG THIAGFRRGL 301 TRTLKAYADK SGLLKNVKFE ITGDDFREGL TAVISVKVQE PQFEGQTKTK LGNSEVMGAV 361 DIAVGEALGI YLEEYPKEAR MIVNKVILAA TARAAARKAR EMVQRKSVMG GSGLPGKLAD 421 CSDSDPEKCE LYLVEGDSAG GTAKQGRDRN FQAILPLKGK ILNVEKAMEH KIYENDEIKN 481 MFTALGVSIG TEEDDKALNL AKLRYHKIVI MTDADIDGSH ITTLILTFFF RYMKALIEAG 541 YVYIAAPPLY QVKKGKEFEY CWNDKQRDDA VQRLKGAGKE ESVHIQRYKG LGEMNAEQLW 601 DTTLNPATRT LMQATIENAA ECDHTFSMLM GDEVAPRRDF IERNAKYAKI DA //