LOCUS ACU02994.1 1023 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 hypothetical protein protein. ACCESSION CP001681-768 PROTEIN_ID ACU02994.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0772" /transl_table=11 BEGIN 1 MATKVWCFFL CWFTLGNLHA QSPATVSWAL TANQSASVTG NITAAVQQLA GLTIQDYISG 61 GQRTLPPGGT WPAQTVPDTT RFMQFALSPL SGNDLNVSSV ALMISFYGSS AGRVNMAWST 121 DSVHFTNLTS NFSLVSGTTP TSYTFGGLNI TVPSGKKLYF RISPWTASVI NNKYLLIRNV 181 SISGTTNVSP FASWSLTANQ TASVTGQVTA PVQVLSGLKV NNYISGSGGQ RILPLNGNWP 241 ANTGADSNRY VQYAVNPAAG YNFVVSQVKV PLSFNSSAYA HARICWSTDG TTFTNLNPDV 301 TLTSGSVPAV ITFANLNIPV TDNRTFYLRV YPWTTSGFSD GRYLVSKDVV VSGSSEVSPQ 361 LAFPGAEGGG RYTKGGRGGD IYYVTNLNDN LAGSLRDAVS QPNRTVLFKV SGTINLQSAI 421 TITKDNITIA GQTAPGDGIC LKNYGLGIRA NQVIVRYIRS RPGDVITVPG DSSKVVDAMY 481 NNFGSPISQP YNNIMIDHCS MSWSTDEVGS FYAVSKFTLQ WSMLSESLYQ SLHTKGTPHG 541 YGGIWGGQNA SFHHNLLASN SNRNPRFSGS TTSLQPELEY ADFRNNVIFN WVGSPYGGAG 601 GHYNMVNNYH KAGPATTGGA GSSATNRKNR ILLFPSFSTT LAGDTVFGAK FYIDGNYVHG 661 FPDVTADNWT KGVQLDSYYD AAAMKAAGKV STAFPYSPVV TQTAEAAFDA VMNSAGAILP 721 RRDTVDRRII KETRTGTATY EDSSYVAAGM GHPSGIIDSQ NTVGGWPVLS STTYARDTDN 781 DGLPDWWEKM TQGSATDSTG LDRNTYAADG YTLLEKYLNG IPSPDQQVTF MAINAQKGGL 841 DTVKVDFNID WAKDQFKLGL YRSTDSLSFT KITEITASIN QTAYLLKDNA APGQTVHYKI 901 GSKRIDGTGS TVYSNTVSIH HNPLMLKRSS TLPKMPDTSI VKELKKLKLY PNPVTGILKV 961 NHSKANPSAM MTVYTITGRK VIVKSIQNGI MQTEIDATDL PQGSYIIEFN NISERQSGLF 1021 IKI //