LOCUS ACU02481.1 852 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor protein. ACCESSION CP001681-255 PROTEIN_ID ACU02481.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0255" /note="PFAM: PEGA domain; TonB dependent receptor; TonB-dependent Receptor Plug Domain" /transl_table=11 BEGIN 1 MFYRIIRQQS FLPVLFLFVL SGQSLFAQQK NLLASKVTIS LPADSLIKNL LRLELKTRNN 61 FAFDPDQLRS IKIPEQFFVQ TALSTVLEKI LSGTNLVFSQ IGNDIVIAPK KGVIWTIHGH 121 VRDKSSGEEL MGATLQIQAL EVGVNTNQYG FYSISVPEGD YLIKVSNPGY LDFEKRVKLN 181 GNRQEEIELL LKERQLEEVV IRQSIITPNP ILRNELNFAA KQLNNTPYYA GETDVMKRLQ 241 MENGIKALTE GSSGLFVRGG NADQNLILLD EAIVYNPSHL YGLVSVFNAD AVNNLQVYRD 301 YMPANYGGRL SSVIVNRMAE GNSKEFHLNG GINLMSARLA VEGPIVKDKG SFIVAYRRSL 361 LDVFHSKFKL FNPNSVYYDI NAKANYKLNR DNSVFYSVYL GKDHLLSENS YTNNWGNLTS 421 TLRWNHVFSS RVFLNVSAIY SNYSNLLDLN ADTLSQKSQW STGVKDLTLK ADYTYYRTPS 481 NQIKFGLSGI YHQFSPGEMF NQEAFEFNIS RDKSFESALY YSQQISLSKL FELNYGLRLG 541 FFRNSEEKRN IFDAEGNRLK KYDHKFFVKP EPRVNISYLP TANQRFFVTY NLNYQYLQLI 601 QNSTLAFSSL EPWVPASANI KPQRSNHFAL GYRYSPANYL FSISVYYKKL DNQLDLIGHA 661 QIIRNPEVRD QLRAGTSNAY GVEVEMNKTA GKFSGTLAYS YSRVYRKISD INFGERFVAN 721 YDIPHELKLT ARYEFNNSLS VQSFFTYSTG RPLTLPVGYY QHDGLNVPIF EGRNTSRFPD 781 FSRLDVSAQY RLQSHLSGRR SLQHTISIGA YNLYNRKNPL YYHLNSSSFE SKGSTIEYGF 841 GFYPWVAYSF KI //