LOCUS ACU02447.1 830 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor protein. ACCESSION CP001681-221 PROTEIN_ID ACU02447.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0221" /note="PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type" /transl_table=11 BEGIN 1 MTNYFYKVLL LTLAFCSATI TLNAQSASDG KITAKVVDAQ TGETIPFASA MIINRKTKAV 61 VKGMQTDANG NLNMTALPKG AFTFKVSYVG YQTMVRDSVA ITDAHREINL GTIKMKTAKG 121 TALKEVAITA QKSTMQLGID KKVFSVDQSL VSEGGSASDL LQNVPSVQSD IDGNVSLRGS 181 TGVKVLIDGK PSMIAGGNVA QILQSIPASS IESVELITNP SAKYDAEGQS GIINIVLKKN 241 KKLGLNGSVA LTAGNRDNYN ANTSLSFQNN KVNIYGNYSY RYGNRLGGGY SNIQYLNPSF 301 PTAFANQSTD SKSLDKGHNF KAGLDYYLAP KSILSFTGGF NIRDNDRNEF LNIDKLNASK 361 NPLELSRRNN SNSGSGGSYD LSLDFVQKFK KPKEELTFNF SFSDGTNDNY QNYQTDVYNI 421 NGSDVNLLPA IQINDGKGTN RSYNIQTDYT LPVGKAGKIE AGYRSQIRYA DNNTFSTNFN 481 HLNDEYDINF ALTNEFNSKD QVHALYVNFQ NQVKNFGYQI GLRGEDATLD TRLGRYDNAG 541 NLSYVPGKVA YKRLYPSIFL TQKFNADQQL QLSYSRRVNR PRGWDTNPFL DVSDPLIWRQ 601 GNPNLKPEDV HAYELSYSKY WKKITFISTA YMRQTNDVIQ RIRTEADENG ITIVTPRNLT 661 RELSSGLELI ARVDAAKAWN FTGNVNLYQR KLDGVPQFGI VDNSGFSWNA NLTNNFILPY 721 NITMQVKGDY RSREIMAQGR RNAMYAVDAG ARYDFKNKKS SLSLNVRDVF NTRRWSMTTG 781 ANNAITDFRR YMQGTMASLT YAYRFGKNDF NFKKTKKSDQ QEMRSDEESF //