LOCUS ACU02346.1 833 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor protein. ACCESSION CP001681-120 PROTEIN_ID ACU02346.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0120" /note="PFAM: TonB-dependent Receptor Plug Domain; Cna protein B-type domain; TonB dependent receptor" /transl_table=11 BEGIN 1 MENYLKSSKL KRSIIAVFTV LMLPLLSMAQ FSISGTVSEK SNQVLPGASV RLKNKGTGLT 61 SDAHGQYRFN NLKAGNYVLI VSYIGYRSTE KAVSLNADAV VDITLAPAAF LADEVIVRAT 121 RANEKSATTY KNIGKKEIEE NNFGQDLPFI LNNTPGVVVT SDAGAGVGYT GIRIRGSDAS 181 RVNVTVNGIP YNDSESQGTF WVNMPDFASS VDNIQIQRGV GTSTNGAGAF GGSVNIQTAS 241 VADQAYAELN NAYGSFNTLK NTVKVGTGMI DNKWSFDGRL SRIKSDGFID RAASDLKSYF 301 LSGAYYGKKD LLRINVFSGQ EKTYQAWNGV PEAKLRGDLV ALEEHYNNNL GYLYYTDADR 361 ANLFNSNNRT YNQFTYKDQN DNYTQSHYQA LYARQLNEKF SFNGALHYTD GAGYFEEYKN 421 DQKFSKYGLP DVSVGGSPIS KTNLVRRRWL DNDFYGLTYA FNYVPSSNLN ITLGGAYNQY 481 RGKHFGQIIW AQYASTAAND YHYYDGKGNK DDFNTYAKVN YSPVSQLSLF ADLQYRNVNY 541 DITGLDKNRN TLDFHNKYNF FNPKVGATYF INQQSNVYAS FSVGNKEPNR DDFSNLKAGL 601 PVPKSEHLNN VEAGYRITDK DFNVGINVYG MFYKDQLIFT GEVNDGGDPY RQNVDKSSRM 661 GLEIDGSYSI SPKFIINANA ALSRNKIKNY IDYVSVYDAN FDLINVQATS YANPDISFSP 721 NTVLFGELVY KPLSGFAMAL QSKYVSKQYM DNTQNESRKL DAYWVNNARL GYDFNLKGIK 781 NINIGLLINN ILDKKYESNG YTYSSIYPWG MLTENFYFPQ AGTNFLLSLN LKF //