LOCUS ACU02333.1 4896 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 conserved repeat domain
protein protein.
ACCESSION CP001681-107
PROTEIN_ID ACU02333.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_0107"
/note="PFAM: Domain of unknown function DUF11; TIGRFAM:
conserved repeat domain"
/transl_table=11
BEGIN
1 MNKRLLIFFI AQFFICTTGF AQFTLSENFK GSTANGIVLG GSPSASLTSG GVDPVNQGYL
61 RLTKDALDQR GYAYIDKAFP STLGVLLDFE YKTWHSVTNE GADGIVVFLF DGSITQSNFR
121 LGGTGAGLGY APRGDKNEAG LGGAYLGIGI DEYGNFSSNY GTVGAATDRA ASPLTLGRRI
181 NSITLRGRES DAYRLLATTT PTASSQIQHT PTSGSRPNDA TFYRRVQVEI KPNANGKYDI
241 IVRWAISPGG ALTQQFSYSL VDQSGVSYAP PATLKLGFTS ATGGSLNNHE IRNLTVTTPG
301 NIRVGKRADK DVLRTIPAGT SANQVTYTVE VVNDNSVALN NIEFKDRLTD VNGTLIPLSA
361 FNIGTVSFTG FLAGTTVNKS TTANEIAGSL NMAAGATGKI TVTGTLNAVP AGNTLRNTAS
421 INPTDITDLD PDNNIAEVNT PVLAEDVDLT IAKTAAVPCL STSGNDFNVV VSNVGAVATT
481 AINKIVVTKT YPTSYTFTNL SNPNWTLGTR ETSGSNYIYK YTYTGGTLAS GASTSPISYR
541 ITVPTAVSTY ADVAQVSYLN SSNANIEVTA NQGNNSTSNT IATVSAKPAV ADKVTYCLNA
601 TATALSATPT NGNTLLWFRT KGGVSSINAP VPSTATAGNT SYFVKQTNGS CESDYAEIVV
661 TVQAAVNAGG IGSNQTICNG ATPAALTSST AGSGGTAGSG TAYRWERSVD GGATWTPIVG
721 ATASTYAPAA LTATTQFRRV YISTLNGVAC ESVTGPVTIT VQDITGAGSI GTDQTICTGT
781 IPAAFTSVTN GSGSAGAAIS YKWESSTNGT LWTAISNATS ATYTPTAALT VTTQFRRTAI
841 STLNSMACSS VPSNVVTVTV NQNPSVANAG ADAEQFNSGV FTLQGNAPAV GTGMWSVVAP
901 GTATFQDPSN RNTTVTIAEN TSAILRWTIS NGPCAVSVDD VKITYTKRTD LQVTKTIDKT
961 TPKVGDNVTF TITAKNNGPS NATAVKVADA LKAGYTFISS SSANYASSNG EWLIGSLENG
1021 LSQTLTIIAR VNANAIAADY ANVATISGAE TDPDGSNNTS TLNTIVPVPS SDIEINKTAT
1081 PKPAIAGQAL TYTITLKNNG PSTLRTSDVF ALTENLPAGY TASSFTASAG TFNPATGNWN
1141 GLTLATGQQA TLTIAGAVTA TASGTLSNTV SVAVPATISD PDISNNSKTD NTVISRLLDL
1201 GITKTSAPKP VIAGSNLTYT ITLSNNGPAS LLATDVVKLN ENFPAGYTAS TFTPSTGTFD
1261 KNTGNWTGLN LTQGQTATLT IAGTVAANAV GTLSNTVSLV APTGTTDNNT TNNSATETTA
1321 INRSVDFEIT KTATPKPAVA GEALTYTVTV SNKGVSAMNA ADVLKVTDAL PAGFTASSYN
1381 ASTGTYNAAS GNWTGLTLAS GQSASFTITG RVAASATGNL VNKAVLTVPA GITDPTGANN
1441 EATDNTVISV KPALAITKSG ASGLTAGSAV NYTLKIVNTG SSDAINAAIN DAVPTSVQNV
1501 TWTATPNGAA TIVSGGSGTG NTVAVGANIP AGNANNYINV NISGTLSPAA TGSITNTASV
1561 VPAEPQGSGS NSSVNANVTS SSGIVISKAG ASSASAGDAI TYKIEMGNNG PSNATAVQVA
1621 DLVPAALSNV SWTSQTQGGA SITSGATGSG NTINLIANVP AGIQHKVILN VTGTIKPDYT
1681 GAITNTVVAT PQETGSSPVS AQAVTSINSK PVFTIVKSGP ATVIAGNTIV YTITVRNTGP
1741 SNSLNTVITD DIPSGITNVT WTSSVTDGVA SITSGASGTG NALSLTGNFN ANSTVQVHVT
1801 GKVSSGLLGN VLNSATVTPA EAGVVPVTSG QVITSVQTKS GLTVAKNGPS SVISGTNITY
1861 TIEVGNTGPS DAMSARVTDL IPAEILNPVW STATQGTAAI ISGGTGSGND LQTVVNVPAG
1921 AGNKVIVTIT GKASASYSGA ITNTAYVTAT EQNSPSPQSS VTTTINRLPS VSVTKNGPSS
1981 IVAGAGINYS IDVTNTSTAD AQNLEIKDLV PSEISAVSWT AVTAGSATVN GTASGTGNNI
2041 VLTGNIPAGA ANKITLNISG KVSAAYSGTL SNTATATPAE TGTAVKTSSV STAVQKIPVL
2101 SIEKTGPANI NAGQDISYTL KIKNNATANA DLALITDNVP AAIQNVTWSA TVAGDATISG
2161 TANGTGNAIS LTGNIPAGTG NEILVIINGK VSPSANASLV NAATVTPAET GAAAKTSNTI
2221 TTQVSKTPSV SLIKTGPATA KAGEVVTYII DAVNTGPSNA DNLAIADVVP AILTNVTWTA
2281 VANGISTLAS TSGTGNLALT GNLNVGAANK IRITIIGTVP ANQVNTTITN TARAIPAETG
2341 LTVSSNTIST VITNQSNISI VKSAPVAVNA GELVNYTLLV KNAGPSNALN ATIADAVPAA
2401 IQNVSWTAVA SGTANLTFGA TGTGNAVNMR ANLPAGDTNT VLVQITGKLN PAFSGTALSN
2461 TASVAPSETG NPVVNSNTTN TSVSKQADLR ISKTGPASLF AGEQVTYTIT LENQGPGDVT
2521 GAAISDLLPA SIINTSWSVA TQGTASTNVN NGTGNLNLSA SLKAGGTDKV VVTLLGTVDP
2581 GYQGVNVTNT ATATPPSGVT DPTPASAVVS TAITRKANVR MVKSGPANAK AGEEINYTLR
2641 ITNQGPSSAI GTAIIDNLPA GIVAGSVTWT ATATTGSSVS SASGTGNINL TADIAPVSGV
2701 IEVKIKALVS PSLTDGTSIA NTATATVAVG ITDPEPGNNT STFNTVVDND PNFTVAKSGP
2761 ANANVGDHIT YTILVKNTGP GDITEAFIVD NVPDDVEVLD WTATANGSAV ISPGSSSSGT
2821 TNNVYTVADI PTGNNSILIT INGIIKQSAG SSFTNKAEAT SGVVKGSSVS TSVNRSTDIA
2881 VIKAGPQSAS AGETVTYTLN VYNNGSVDVD NLVITDLVNT LLTDVSWTTT AMGSARVSSV
2941 PYGAGNTVQL TGNIAGGQGN FITVTINGKI PSNAALGPLS NTATVTLPSG VTDYNTANNT
3001 SQVSTAIIST PTLVLQKTGP ATAAAGNQIT YRIKVENTGP SDAAAVNIAD VLPAELSGVQ
3061 WLASAGGTAA GIIGTSSGNG NVAVNANIPA GSYITVDVTG TISADFSGTI KNTASAKIGS
3121 SPAVSSPEVS TVVSKLTNLT IAKSTASTLS AGEPIVYTIE LGNNGPSNAI GAVLTDNIPA
3181 TILDPTWSAS VSGGALVTAN GTGSGNTLSL TGNIPKGGKI YVTVNGTLAA NATGSVSNTA
3241 TITPSEPGNP PVVSSPAVAV VKQSPNLLLT KSAPTLSSGG STITYALKLV NSGPSDALNT
3301 ILTDAVPGNV ANVSWTGTAA NGASLLSGSM GTGNNVSLTA NIPANGSVDV VISGTIDPLF
3361 NNTLVNTASA SPSEPGIPAV QSTASTLVTP AVDFVVSKSG PARVSAGETI NYQVIVRNNG
3421 PSTALNSVIA DVVPAEIGNV TWTATAEGTT AILSAKQGTG NNIQVNANLP SAAADRIVID
3481 ISGTVAPSFN GTISNTASVT PAETGTAVTS GPVATAVSRQ PVIKVTKGGP AILRSGNKIS
3541 YLINIANEGT GDALDLAIND VAPLALANLS WTVENIGAAT TSATSGTGDI NIRADLPAGV
3601 ANAVNIYVSG EIPAAFDGTI LNSVTAQPSE SGALSSTSAV ATTVYRSSLT LVKTALNAVG
3661 KAGDVIDYEL SISNTGTSAL TGLVIEDAGA DAGSITPASI ATLAAGATVK ATARHTLSQA
3721 DVDLGKFSNS ASVFAKAPDA SEVSDISGNT AGDDLPTVVQ IMPVPAVRLV KKVNGGVPNQ
3781 AGQAINYDLT VKNTGNVTLN NLLVTDANAV ISGSPISQLA PGATAVVTAS HVLTQADVDA
3841 GTYINTAEVT ASPAIGANVS DKSGTEETND EPTVSTIVPS GSISLTKAAN NTGTKAGDVV
3901 NYTLVVKNTG NITLSNVVVT DAGADAGSVL PASVAVLPPG ATATLSARHT LTQSDIDNGS
3961 YSNQAAVSAQ DTKGTIVSNP KSDDPATPAA DDATVVSIVE SGAITLTKVA GNTGSRAGDV
4021 INYTMVVKNT GNVTLSNIAV NDAGADAGSI TPASLVSLAP GVSATVTARH TLTQAEVDNG
4081 TYSNQASVSG NTIKGSLVSN PKSDDPATPA ADDATVIAIV PNGAMYLTKI ADNTGSRAGD
4141 VINYTIVVKN TGNVTLSNIA VSDAGADAGS VSPASIAVLS PGATATVKAK HTLTQTEVDN
4201 GSYSNQASVV AKDPANTTVS NPKSDDPATP AADDATLSTI VPNGAMYLTK IADNTGSKAG
4261 DVINYTIVVK NTGNVTLSNI AVSDAGADAG SVSPASIAVL SPGATATVKA KHTLTQTEVD
4321 NGSYSNQASV VAKDPANTTV SNPKSDDPAT PAADDATLSM IVPNGALHLT KVADNTGTKA
4381 GEVISYTIVV TNTGNVTLNN LVIRDPGANA GSVLPAVIAN LAPGARATVT AKHTLTQAEV
4441 DYGSYSNQAS VSGDTPKGAT ISNPGSDDPN TPAPNDATVI SVTSSPAITL LKSGIVSSDA
4501 NSITYSFTIK NTGNVTLSAI TISDPKIGLT RTVSAPLAPG TSIVETAVYT LSQADKNAGT
4561 VSNSATVVAR APGGQTVSDV SGTAENNNTP TVTLVPQKPI IALVKTASFN GNKITYTFGI
4621 KNLGNVTLNT IELSDIKLGI SNKAIVVTNG LLPDAAVVVT EVYTLTQADK DLGQVSNTAT
4681 VQARGPSGAV VQDVSGTAEG NNTPTVIAVP KSPVAVDDKL ETKANSPVVV AVLDNDDPGN
4741 SAFDQLTVEI VTQPRHGTVK VNTDGTITFT PNPGYTGSDS FQYRVKDAFG YYTNVATVTV
4801 NSNFFEIRVP NLFTPNGDGI NDTFEIRGLN QYQDNELNIF NRWGNEVFKQ KGYANTWTGE
4861 GLNEGTYYYI LRVKRIGSNQ YEVFKGYVTL VRAFKK
//