LOCUS ACQ82096.1 706 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 dehydrogenase E1 component protein.
ACCESSION CP001618-3830
PROTEIN_ID ACQ82096.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_3854"
/note="PFAM: Transketolase, C-terminal domain;
Dehydrogenase E1 component; Transketolase, pyrimidine
binding domain"
/transl_table=11
BEGIN
1 MEPNMLQLLD PDGRRRESAE YDGWVEDVDD AALRSLYQDM VVVRRLDAEA TALQRQGELA
61 LWPPLLGQEA AQIGSARALR PGDFVFSSYR EHAVAYVRGV AVVDLIRVWR GLTASGWDPF
121 AVNMATPQVI IGAQTLHATG YAMGVTFDGE AGNGDVAVTY FGDGAMSEGD VNEAMVFAAS
181 FRAPVVFVCQ NNQWAISEPA GLQSPVPFAG RAAGFGIPSV RVDGNDVLAM LAVTREAVAR
241 AANGGGPTFV EAVTYRMGPH TTADDPTRYR DAAELDAWRR RDPITRLEAH LRGPRRAERG
301 RRRPRPGRGR RRGGRAARRV HRARRPAGRR DLRPRVRGAT PCGGGPACGV RTLCRRIRRG
361 SRRRRGGRAM TTTLTLAKAM GAGLRRALAD DDRVLVMGED VGRLGGVFRV TDGLQAEFGP
421 HRVIDTPLAE AAIVGTAIGL AFRGYRPVCE IQFDGFVYEA FDQIVSQVAK MHARTNGKVR
481 LPLTIRVPVG GGTGAAEHHS ESPEAYFAHT AGLRVVEVSS PQDAATMIRQ AIACDDPVIV
541 FEPKRRYHAK GEVDLDVDLA QATPMTSARV VAEGSDVTLV TYGGLVPVAL DAAVAASDEG
601 VSVEVIDLRS LSPIDHDAVA ASVRRTGRLV VAHEGPGQAG LGAEIVAVAT QRCFFHLEAP
661 PVRVTGFDIP YPPAKLEGPH VPDLDRMLDG VDRVRSGAPA LEEVLG
//