LOCUS ACQ81147.1 1085 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 UvrD/REP helicase protein.
ACCESSION CP001618-2881
PROTEIN_ID ACQ81147.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_2902"
/note="PFAM: UvrD/REP helicase"
/transl_table=11
BEGIN
1 MSAGRGVIVD VTTSAFAPPL SFGEQADGVT LDASQRAVVD AAIWGGKHVV LGAPGSGRTT
61 TAVAAFAELA AAGGAEDLLL LVPTRRQAAR VREAVATAVR HTVGRVLVRT PASLAFSVLR
121 SRATLLGEPA PALLVGADQD RILAELLAGH AEGEGRPVPW PPSVPREALA LRAFRGELRD
181 VLMRAAEAGW DGEELARQGR RRRRPEWVAC AAVLAEYTEI TQLSSVTPDR GAQYDVATIV
241 DEAARALATW EADLPGHEPP RWRTVIHDDY QDATLATARL LGTLAGHGSS LLLLGDPDTS
301 VQTFRGAVPS LVARAGAAGS DVGAFGATVH TLRTVWRGTP ALRSLVASLS DHLPALGGHE
361 RRRAAVAPAA TGVPDGREEP GAWDPGRMRG DVDPLGSDAV EVAVVRSAGE EARLVARRLR
421 EVRLRDGVEW SRMAVVVRRT AQVAPLRRGL RAAGVPVATA SAEVPLRDEP AVRPLLRALA
481 MLDAGTCTPE EASWLLCSPL GGLDAVALRV LRRELRREEI AGGGERASDE LLVELLDDPS
541 RAATLPPRLR RACARLARTL ARGAAAAAEP GASVETLLWA LWDASGLASD WRERALGSGP
601 TAERADADLD AVIALFRAAE QFADRTPGAR APDFLTYLET QEFASDTLAA RGRRAESVPV
661 LTASAAAGQE WDVVVVAGVQ EDVWPDLRLR DSLLGAQAVA EVAAGRDAAS AGPAQARRAV
721 LHDELRMFVS ALSRARRRLL LTAVQDGETR PSEFLRLASA GPAPRADDEP DHRLVRVPPA
781 LDLRGLVGVL RAETLRGRAA DPWAVRLLAS LAAAEVPFAH PDAWAGLAPT STPQQLWADD
841 DVVPVSPSSL EYLQACALRW LLTTAGGRSG SALPQEVGTL VHEIAADLPH GGAAELLAEL
901 DRRWPALGLP EGWAARRTRA GAEEMVRLLA DYLAGVPGHV DVEVPVDVVV DRARIRGRVD
961 RVEHTQDGVR IADLKTGATA VTAQEAEHHP QLGAYQAAAR AGAFDGAAAD GARLVYVGAG
1021 GRSAKHRQQA APPPGDEDWT RAMLAEATDA MSASTFLAQA NPSCERCPVR ASCPVWPGGG
1081 RVVEP
//