LOCUS ACQ81048.1 1259 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 nitrate reductase, alpha
subunit protein.
ACCESSION CP001618-2782
PROTEIN_ID ACQ81048.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_2803"
/note="PFAM: Molydopterin dinucleotide binding domain;
Molybdopterin oxidoreductase; TIGRFAM: respiratory nitrate
reductase, alpha subunit"
/transl_table=11
BEGIN
1 MSRTSPAADV DARGSDGPLE DALLRLGRHL RPGEVSEDLR QVFLRGGREG DVFYRDRWSH
61 DKVVRSTHGV NCTGSCSWKV YVKDGIITWE SQQTDYPSVG PDSPEYEPRG CPRGAAFSWY
121 TYSPTRVRYP YVRGVLLAAY REAKARTGDP VLAWAALTGD PDTARAYKSA RGKGGLVRAS
181 WDEAAEIVAA AHVHSIKAYG PDRIAGFSPI PAMSMVSHGV GARFIQLLGG TMLSFYDWYA
241 DLPVASPQVF GDQTDVPESA DWWNSTYCIM WGSNVPVTRT PDAHFMTEAR YRGQKVVVVS
301 PDYADNTKFA DEWMAVHPGT DGALAMAMGH VILTEHFAHE RTVPFVDYVT RYTDMPYLVA
361 LDESPTPESY VPGKFVTAAD LPEHAAEANA AFKPVVLDDG GSPVVPNGSL GHRWGEADVG
421 RWNLDLGDLR PLLSAADGAG AEGTAAVLLP RFDLVPGDGE EHQGGSGVLV RGVPVRRVGG
481 RLVTTVFDLM LAQYGVNRPA LDLPGTWPSG YDDPQPCTPA WQEQFTGVSA AQAQRIAAEF
541 ADNAERSGGR SMIIMGAGAN HWFHADTIYR AFLALTTMTG CQGVNGGGWA HYVGQEKCRP
601 ITGWAQYAAG LDWSRPPRQM IGTAFWYTAS DQWRYDGLGA DALASPLARG LFADRTTADC
661 LVESAQRGWM PSYPTFDRNP LDLVDEAEAA GKEPARHVVD ELGAGRLRFA VEDPDDPANF
721 PRCVTIWRAN VLGSSGKGNE YLLKHLLGTD AAVFAQESEP QRRPRSVTWR DEAPVGKLDL
781 LTTLDFRMTS TTLFSDVVLP AATWYEKHDL SSTDMHPFVH SFNPAIDPPW QTRTDFDIFH
841 TIARRISELA ATHLGVRKDL VAAPLQHDTP DAMAVPHGTV LDCGAGPTER ELVPGRTMPK
901 LVVVERDYPA FAARMAALGP LTDTLGMVTK GVPYDPTEEV AHLGRLNGVV ADGPAAGRPR
961 LEADTHVCET ILALSGTTNG RLAVQGFERL EERTGQRLAD LARDEQGKRV TFPDVQARPT
1021 AVITSPEWSG SEHGGRRYSA FVVNVERLKP WHTLTGRQHF FLDHDWMSEL GENLPVFRPP
1081 LDMHRLFVDS PPLGDTSPSG FPASAGHAEV AVRYLTPHSK WSIHSEYQDN LFMLSLSRGG
1141 PNIWMSPVDA AKVGVVDNEW IEAYNRNGVV VARAVVSHRM PPGTVYMHHA TDRTVDVPLA
1201 ETSGLRGGIH NSLTRILLKP SHLAGGYAQL AWAFNYLGPT GNQRDEVTVI RRRSQEVEY
//