LOCUS ACQ80452.1 910 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 DNA polymerase I protein.
ACCESSION CP001618-2186
PROTEIN_ID ACQ80452.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_2200"
/EC_number="2.7.7.7"
/note="PFAM: 5'-3' exonuclease, C-terminal SAM fold; DNA
polymerase family A; 5'-3' exonuclease, N-terminal
resolvase-like domain; TIGRFAM: DNA polymerase I"
/transl_table=11
BEGIN
1 MAPRLAPVTD DAPTSATTNA SVPRGRLLLI DGHSMAYRAF FALPVENFST TSGQPTNAVY
61 GFTSMLINLL RDEDPTHVAV AWDVARTTFR TEVYAEYKGT RDATPEPFRG QVPLIQEVLT
121 ALRIPSMSKD DVEADDVIAT LAGQAEQAGL DVLVCSGDRD TFQLVSDAVT VLYPRKGVSD
181 LVRMSPAAVE EKYGLAPALY PDLAALVGET SDNLPGVPGV GPKTAAKWIL AHGGLDGVIA
241 AADQITGKAG ENLRAHLDQV ILNRRLNRLL TDVELPIAVD DLARSEIDRE ATHEVFDALQ
301 FRVLRDRLFE YLPDATAPTD VAELAAEVEV LAPGGLEAWL AGRSGALLGL EVRGSVQQGS
361 GDAWALAIAD ADGAALGIDL AEIDPADEKV LAQWLADPEA PKAVHDAKPA WHALTGRGLE
421 VRGVVMDTAL AAYLCHPDQR SYDLADLVVR YLHRELPRTD LDETGQGMLD LDADSGAKSA
481 GARAVAVVEL AGPLAEEVAD RGAQALLEDV ELPLLRTLAE MEHDGIGADV EYLRGIEREF
541 DAVVERAALG AYEAIGRQVN LGSPKQLQEV LFDDLGMPKT RRTKTGYTTD ADALADLYVK
601 TEHPFLEHLL AHREAIRLRQ TVEGLLRSVA PDGRIHTTFQ QTIAATGRLS SADPNLQNIP
661 IRTEEGYRIR EGFVVGEGYE TLLTADYSQI EMRIMAHLSG DEGLIEAFRS GEDLHSYVGS
721 RVFGVPTDEV TSAMRSKIKA MSYGLAYGLS AFGLSKQLSI DVAEARTLMD DYFDRFGGVR
781 DYLSGVVAQA RQVGYTETLM GRRRYLPDLT SDNRQRREMA ERMALNAPIQ GSAADLIKVA
841 MLGVHRQMGE AGMSSRLLLQ VHDELVLEVA PGEREALEEL VRAQMGAAAE LSVPLDVSVG
901 TGRSWREAGH
//