LOCUS ACQ80369.1 834 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 Kojibiose phosphorylase protein.
ACCESSION CP001618-2103
PROTEIN_ID ACQ80369.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_2116"
/EC_number="2.4.1.230"
/note="PFAM: Glycosyl hydrolase family 65, C-terminal
domain; Glycosyl hydrolase family 65, N-terminal domain;
Glycosyl hydrolase family 65 central catalytic domain"
/transl_table=11
BEGIN
1 MRRDAYGMPD HLDRDRFPVD EWRLREVRFS AGDQGTTETL FSVGNGYLGM RGNVEEGRDS
61 FSHGTFINGF HETWPIRHAE EAFGFARVGQ TIVNVPDTKI LRLYVDDEPL LLTVADLPSY
121 ERTLDFADGT LTRDILWRTP AGKHVRVRSR RMVSFAQRHL AVMTYEVTLL DADAPVAISS
181 QILNRQDGSD EYAVRAAALG SGFDPRQAGR LAERVLQPEL QWEGEGRYVL GYRCTNSGMT
241 LAVAADHTIE TANEVEELSQ IEPDLAKHVY RIRARRGEPI LVTKVVSYHT SRGIPARELV
301 DRCRRTLDRV RENGTQETFA EQRSWLDDFW ARSDVVLHGQ PAAQQAIRWN LLQIAQASAR
361 AEGSGIAAKG VSGSGYGGHY FWDGEIYVLP FLTYTMPRAA RNALRFRYTM LDAARRRASE
421 LNQDGALFPW RTINGEEASA YYAAGTAQYH IDADISFALC QYLTASGDDD FLAREAIDVL
481 VETARMWADL GFWRGNGAWA FHIHGVTGPD EYTTVVNDNL YTNVMARFNL RAAATAVERL
541 AAADPEAYRH MVTRLQLADS EVAEWGRAAD HMHIPFDARL GIHPQDAQFL EKELWDLSNT
601 PADKRPLLLH YHPLVIYRFQ VLKQADVVLA LFLQGDGFTA EEKLADFDYY DPLTTGDSTL
661 SAVVQSIVAA EVGYQELALE YFGDALYVDL ADLHANTADG VHVASAGGIW SALVAGFGGM
721 RDGGGQVTLD PRLPELWEGL TFRLTLQGTR VRVDLRQEDL TLTVERGTEA TLLVRGERVT
781 VSAEEPVLVP LEDQGPRLIG APTTRDIEGT RRADGTVIVA TVPDTHEDDE HLFG
//