LOCUS ACQ79986.1 968 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 leucyl-tRNA synthetase protein.
ACCESSION CP001618-1720
PROTEIN_ID ACQ79986.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_1730"
/note="PFAM: Anticodon-binding domain; tRNA synthetases
class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial
and mitochondrial family"
/transl_table=11
BEGIN
1 MTDAAATHQP APSAADVPPH RYTADLAERI ELAWQDRWAS EGTFHAPNPS GDLVGDAAAE
61 KFYVLDMFPY PSGKGLHVGH PLGYIATDVV GRFQRMQGRN VLHALAYDAF GLPAEQYAVQ
121 TGQHPRITTE QNIATMRGQL RRLGLGHDDR RTFATTDPDY VRWTQWIFTQ LFASFYDADA
181 PRPDGGTGRA RPIAELVAEL DAGTRALPDG RVWTDLDAAA RADHLDSVRL AYISNSPVNW
241 APGLGTVLSN EEVTADGRSE RGNFPVFQRN LRQWMLRITA YADRLVDDLE LIEWPEKVKT
301 MQRNWIGRSS GAQVRFVTDA GDLSVFTTRP DTLFGATFVA VAPEHPLLDA LASEQWPEGT
361 SEAWTGAAAS PREAVTAYRR AASTKTELDR QTEGRDKTGV FTGAFATNPV TGARVPVFVA
421 DYVLMGYGTG AIMAVPGQDE RDWEFATRFG LPIVRTVAPP EGWEGEAYPG EGPAINSAND
481 EISLDGLGVV EAKAAIIAWL EAKGLGTGTV TYRLRDWLFS RQRYWGEPFP VVFDDDGRAH
541 TLPDEMLPVE LPDVPDYAPR TFDPQDADSE PEPPLARLPE WVDVELDLGD GVRRYRRETN
601 TMPNWAGSCW YELRYLDPHD EKALVDPDIE RYWMGPGAER PGGDPTDVAG GADLYVGGVE
661 HAVLHLLYAR FWHKVLYDLG HTASREPFHK LFNQGYIQAY AYADARGVYV PADEVHEEPG
721 LDGETTYTWR GEPVVREYGK MGKSLKNMVT PDDMYAAYGA DTFRVYEMSM GPLDQSRAWE
781 TRAVVGAQRF LQRLWRNVVD ETSGAVVVVE EPADDATRRL VARTIADVRT EYAAMRPNTA
841 IAKLIALNNH LTTLAAVPRE AVEPLVLMVA PVAPHIAEEL WARLGHPASL AHEPFPTADP
901 ALLVEETVTC VVQVAGKVRD RIEVPPAIGE AELRELALAT AGVQRALDGR GVRTVIVRAP
961 RLVNVVPA
//