LOCUS ACQ79534.1 1294 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 2-oxoglutarate dehydrogenase,
E1 subunit protein.
ACCESSION CP001618-1268
PROTEIN_ID ACQ79534.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_1274"
/note="PFAM: Dehydrogenase E1 component; Transketolase,
pyrimidine binding domain; 2-oxoacid dehydrogenases
acyltransferase (catalytic domain); TIGRFAM:
2-oxoglutarate dehydrogenase, E1 component"
/transl_table=11
BEGIN
1 MSTQAHPEPS SLAATFGANE WLIEELRAKY EKDATLVDPE WREFFARQDA TTTTSPPTPA
61 PAAPRNGEAP AARPAAPQAA APAPAKPAPP APAPAAPAPA APAPEAPAPE APAPPAHAAA
121 PSADPRAELA QEDVRADLPP TQPRAAAQPP TAPYTQRLSG VRDEAATAVG DDEVTKLRGP
181 AARVVVNMET SLTVPTATSV RAVPAKLLVD NRIVVNNHLA RSRGGKVSFT HLIGFAVVEA
241 LADMPEMNAG YREVDGKPGV THPSHVNFGL AIDLAKPDGT RQLLVPSIKG AEAMDFATFW
301 TAYENLVRTA RGGKLTADDF AGTTISLTNP GTIGTVHSVP RLMSGQGTII GVGAMDYPAE
361 FLGASADTLA RLGISKVLTL TSTYDHRIIQ GAQSGDFLRI IHSKLIGEDG FYDRVFASLR
421 VPYEPVRWTK DIADDPATEL GKPARIAELI HAYRSRGHLM ADTDPLAYRQ RRHPDLDVQN
481 HGLTLWDLDR TFPTGGFGGK PQMPLRDVLG LLRDSYCRTI GSEYMHLHDP AQRRWLQERL
541 ESGYTKPSAE KQRQIIHKLN AAEAFETFLQ TKYVGQKRFS LEGGESLIPM LDTILAGAAH
601 DGLDSVAIGM PHRGRLNVLA NVAGKSYAQI FSEFEGNQDP KTVQGSGDVK YHLGTEGMYT
661 SPTGEQTSVY LAANPSHLEA VDGVLEGVVR AKQDRIDLGG EGFSVLPVLI HGDAAFAGQG
721 VVTETLNLSQ LRGYRTGGTV HIIVNNQVGF TTGASSSRST LYTTDVAKGL QIPVFRVNGD
781 DPEAVSRVAE LAYAYRQEFH KDVIIDMVCY RRRGHNEGDD PSMTQPVMYS LIENKRSVRT
841 LYTESLIGRG DLSAEDAEKA LADYQGELER AFRETREGGW TPSADSEPVA GLERPESQLE
901 DAGTMVGWET AVPSFVLERV GDAHVRPPEG FTVHPKLAAL MSKRAEMAKA GGVDWAFGEL
961 LAFGSLLLEG TPVRLAGQDS RRGTFVQRHS VLHDHRTGAE WTPLMYLSAD QAKFWVYDSS
1021 LSEFAALGFE YGYSVERPDA LVLWEAQFGD FVNGAQTIVD EFISSAQQKW GQRSSVVLLL
1081 PHGYEHQGPD HSSARIERFL QLCAEDNMIV AQPSTPASHF HLLRRQAYER PRRPLVVFTP
1141 KQLLRLKAAT SSVEDFTHGT FRTVIGDDAV EASSVRRVLL CSGRVYYDLL AAREKGTHGA
1201 DDATAIVRLE QFYPLDGEAL LAELDAYPGA EVVWVQDEPE NQGAWTFLAM RLPALLGDRS
1261 FRVVSRPASA APAAGSAKAS QAELAEIIAA AYAG
//