LOCUS ACQ78658.1 1049 aa PRT BCT 28-JAN-2014
DEFINITION Beutenbergia cavernae DSM 12333 transcriptional regulator,
winged helix family protein.
ACCESSION CP001618-392
PROTEIN_ID ACQ78658.1
SOURCE Beutenbergia cavernae DSM 12333
ORGANISM Beutenbergia cavernae DSM 12333
Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae;
Beutenbergia.
REFERENCE 1 (bases 1 to 4669183)
AUTHORS Land,M., Pukall,R., Abt,B., Goker,M., Rohde,M., Glavina Del Rio,T.,
Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L.,
Chang,Y.J., Jefferies,C.C., Saunders,E., Brettin,T., Detter,J.C.,
Han,C., Chain,P., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A.
TITLE Complete genome sequence of Beutenbergia cavernae type strain (HKI
0122)
JOURNAL Stand Genomic Sci 1 (1), 21-28 (2009)
PUBMED 21304633
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Beutenbergia cavernae DSM 12333
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4669183)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ovchinnikova,G., Saunders,E., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082741
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Beutenbergia cavernae HKI 0122, DSM 12333
Culture Collection ID :: DSM 12333, ATCC BAA-8, IFO 16432, NBRC
16432
GOLD Stamp ID :: Gi02225
Greengenes ID :: 26352
Funding Program :: DOE-GEBA 2007
Isolation Site :: "Cave soil in Guangxi, China"
Isolation Country :: China
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28 C
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: L-Lysine containing
##Metadata-END##
FEATURES Qualifiers
source /organism="Beutenbergia cavernae DSM 12333"
/mol_type="genomic DNA"
/strain="DSM 12333"
/type_material="type strain of Beutenbergia cavernae"
/db_xref="taxon:471853"
/note="type strain of Beutenbergia cavernae"
protein /locus_tag="Bcav_0394"
/note="PFAM: Transcriptional regulatory protein, C
terminal; Bacterial transcriptional activator domain"
/transl_table=11
BEGIN
1 MLRLLDDVSW DGAPVVGARP RAFLAALALA APGAVADDRL VDAVWGDDAP AHPAKALQVV
61 AARARTATSP GAVVRTPHGY RLGLAETDVD TLRLAGLTGL AERSLAGGDA TGARDAAREA
121 LALAGEPEPA PGALGELRAA AAAQKERAAV VLGTALAAGG DHDAALPLLE RAAARRPGDE
181 GVLAALLRSE AAVRGPSAAL ERYDAHRTRL ADRLGTDPGP ELQRLHRELI AADRPVRTGV
241 RFDPTDLIGR DDDVRRLRAM VATSRVTSIV GPGGLGKTRL AQVLARRAEE PAVHVVELVG
301 VSDPQDVLGE VGTALGVRDS VTGRRALTPE QRADIRSRIA QQLDGVPTLL VLDNCEHVVD
361 TVADLVAFLV ATNRDLTVLT TSRAPLGIAA ERVYALAQLG DADAAELFRR RAVAARPDVA
421 LDQREVAAVV RRLDGLPLAV ELAAAKVRVM SVADIDRRLG DRFALLRGGD RSAPDRHRTL
481 LAVIDWSWNL LGEPERQALR RLSVFHDGFV LDAAEAVVRT AGPGVLDAVA SLVEQSLLSV
541 HDAGGSVRYR MLETVREFGR LRLAEAGEAA DAERAQREWA VAYCVAACAD LHGPRQIAAI
601 DRLWDEEANL ADIARRATTL PDAECVVVVM AALADLWRLS GNFARIVAPL NRAVLTVIRD
661 HPLPDALLDP ARDVVGAILM TEGIFGGEAI AEAREVLTRL GADSADPRVA AETTFVLAVT
721 AEDVVGPQAF LSLTASPDPR VAALGWQWSC HWKENDGDIH GAIDAAERAL ALARPEEGPA
781 VTANLHAGLA GMHLQIGDSD AGERYALLAL EPLTALRAVD DTHQLRALLA VVAMRRGDLA
841 QAERILDQVE RADAPEFGFG GHVVTASGRA ELVLAEGHLA EGLRRYRDAH AAAGAFRFPG
901 VAGVPGFEPW TLFSSASCLT AHARYLPADT PPSDAGAVFA AALAATVLAK ARTYVGEGAG
961 FLDYPVAGTV LFALAWWHGR HGADADVVAR LLLLADGFGY NRALPTMSLE AAVAMRDDVT
1021 RRFADLRPAY VGRFGPQLRE EAAALLTQL
//