LOCUS ACM57903.1 952 aa PRT BCT 01-MAR-2021 DEFINITION Halorubrum lacusprofundi ATCC 49239 TRAP transporter, 4TM/12TM fusion protein protein. ACCESSION CP001365-2297 PROTEIN_ID ACM57903.1 SOURCE Halorubrum lacusprofundi ATCC 49239 ORGANISM Halorubrum lacusprofundi ATCC 49239 Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum. REFERENCE 1 (bases 1 to 2735295) AUTHORS Dassarma,S., Capes,M.D., Karan,R. and Dassarma,P. TITLE Amino acid substitutions in cold-adapted proteins from Halorubrum lacusprofundi, an extremely halophilic microbe from antarctica JOURNAL PLoS One 8 (3), e58587 (2013) PUBMED 23536799 REFERENCE 2 (bases 1 to 2735295) AUTHORS Karan,R., Capes,M.D., DasSarma,P. and DasSarma,S. TITLE Cloning, overexpression, purification, and characterization of a polyextremophilic beta-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi JOURNAL BMC Biotechnol 13, 3 (2013) PUBMED 23320757 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2735295) AUTHORS Anderson,I.J., DasSarma,P., Lucas,S., Copeland,A., Lapidus,A., Del Rio,T.G., Tice,H., Dalin,E., Bruce,D.C., Goodwin,L., Pitluck,S., Sims,D., Brettin,T.S., Detter,J.C., Han,C.S., Larimer,F., Hauser,L., Land,M., Ivanova,N., Richardson,P., Cavicchioli,R., DasSarma,S., Woese,C.R. and Kyrpides,N.C. TITLE Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34 JOURNAL Stand Genomic Sci 11 (1), 70 (2016) PUBMED 27617060 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 2735295) AUTHORS Laye,V.J., Karan,R., Kim,J.M., Pecher,W.T., DasSarma,P. and DasSarma,S. TITLE Key amino acid residues conferring enhanced enzyme activity at cold temperatures in an Antarctic polyextremophilic beta-galactosidase JOURNAL Proc Natl Acad Sci U S A 114 (47), 12530-12535 (2017) PUBMED 29109294 REFERENCE 5 (bases 1 to 2735295) AUTHORS Laye,V.J. and DasSarma,S. TITLE An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme: Effects of Perchlorate Salts JOURNAL Astrobiology 18 (4), 412-418 (2018) PUBMED 29189043 REFERENCE 6 (bases 1 to 2735295) AUTHORS DasSarma,S., DasSarma,P., Laye,V.J. and Schwieterman,E.W. TITLE Extremophilic models for astrobiology: haloarchaeal survival strategies and pigments for remote sensing JOURNAL Extremophiles 24 (1), 31-41 (2020) PUBMED 31463573 REFERENCE 7 (bases 1 to 2735295) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-JAN-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4001421 Source DNA available from Professor Shiladitya DasSarma Archaea available from ATCC: ATCC 49239 Contacts: Ricardo Cavicchioli (r.cavicchioli@unsw.edu.au) Shiladitya DasSarma (sdassarma@som.umaryland.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Halorubrum lacusprofundi ATCC 49239" /mol_type="genomic DNA" /strain="ATCC 49239" /culture_collection="ATCC:49239" /type_material="type strain of Halorubrum lacusprofundi" /db_xref="taxon:416348" /chromosome="1" protein /locus_tag="Hlac_2327" /inference="protein motif:TFAM:TIGR02123" /note="TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hwa:HQ1444A TRAP-type transport system, permease protein" /transl_table=11 /db_xref="InterPro:IPR010656" /db_xref="InterPro:IPR011853" BEGIN 1 MTTTNRTDGG IDDSNDGGSG GPPPGDLGSG SGADEPPDDR TDEEISREEA DDLIEEIERR 61 RSLRGPAAIA VAIIGIAFSV FQLFLAARSY TFTIWLPTVD IAGISIAPWQ VSLQLLQANA 121 IHVAFALVLT FLLFPVSTGD GMVTRNFGRI APAASQRLGD RSPVTRALEG GRTGLRWAFL 181 DPDRERVTPV DILFIAVAFL SAFYFMTEFA EIQNMRVFGV DSGRPVTEVY AFLQPLLGGV 241 PFVSEYSYAM ILGVAGILLV LEATRRTLGL PLMLIVATFI VYARWGYLIS GDTPFLGLLA 301 IPPLSWPDIV QNLWYNTENG VFGIPVTVSM SFIYIFILFG SFLEMSGAGQ WFIDLAYGLT 361 GDRKGGPAKA SILASGFMGT ISGSSIANTV TTGAFTIPLM KRSGYDPEFS GAVEASASSG 421 GQILPPVMGA AAFLMVQYTS TPFADIIIIA TIPAIVFFFG VWVMVHLKAV QEGIGGVSGE 481 DTVNFWDHFK RGWFYLVPIA LLLYYLIIER LSVSRSAWFT IVALVALVAL VSAYSEETRL 541 RLFAVFAAIV GVEFASHALA GVNVVGLVTG AGGAGLPPGE AFSAILAGIE WYAMLAGVLT 601 LLSKPDLDAS LLELNPSVQD TAETIGDRTD RDLENSQPFK LGTFVVTSME QGARTAVPVV 661 VAVAAAGIIP GVISVSGLGP NLTSLLLALS GGSIVIMLLV TAVSSIILGM GMPTTVTYII 721 LISMLATPLV EFGIPLLAAH LFILYFGVIA DITPPVAVAA YAASGIAKSD PFETGVKAFS 781 LSLNKAIVPF AFVLAPGIVL LREKANAADL PIREQYRVVG FADLAELSYS VPEILIPIAG 841 VFLGVIALGA TVIGTLYTRV GRLSRAVFAL SSLLLMAPGL LSESVFDTLG LVGVSVSVNA 901 LLLDLTLRAV GFVLFVLFAL RNRRTLDGEG DGAGETDATT GSTEAVAASD SS //