LOCUS ACM57162.1 1525 aa PRT BCT 01-MAR-2021
DEFINITION Halorubrum lacusprofundi ATCC 49239 hypothetical protein protein.
ACCESSION CP001365-1556
PROTEIN_ID ACM57162.1
SOURCE Halorubrum lacusprofundi ATCC 49239
ORGANISM Halorubrum lacusprofundi ATCC 49239
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria;
Haloferacales; Haloferacaceae; Halorubrum.
REFERENCE 1 (bases 1 to 2735295)
AUTHORS Dassarma,S., Capes,M.D., Karan,R. and Dassarma,P.
TITLE Amino acid substitutions in cold-adapted proteins from Halorubrum
lacusprofundi, an extremely halophilic microbe from antarctica
JOURNAL PLoS One 8 (3), e58587 (2013)
PUBMED 23536799
REFERENCE 2 (bases 1 to 2735295)
AUTHORS Karan,R., Capes,M.D., DasSarma,P. and DasSarma,S.
TITLE Cloning, overexpression, purification, and characterization of a
polyextremophilic beta-galactosidase from the Antarctic
haloarchaeon Halorubrum lacusprofundi
JOURNAL BMC Biotechnol 13, 3 (2013)
PUBMED 23320757
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2735295)
AUTHORS Anderson,I.J., DasSarma,P., Lucas,S., Copeland,A., Lapidus,A., Del
Rio,T.G., Tice,H., Dalin,E., Bruce,D.C., Goodwin,L., Pitluck,S.,
Sims,D., Brettin,T.S., Detter,J.C., Han,C.S., Larimer,F.,
Hauser,L., Land,M., Ivanova,N., Richardson,P., Cavicchioli,R.,
DasSarma,S., Woese,C.R. and Kyrpides,N.C.
TITLE Complete genome sequence of the Antarctic Halorubrum lacusprofundi
type strain ACAM 34
JOURNAL Stand Genomic Sci 11 (1), 70 (2016)
PUBMED 27617060
REMARK Publication Status: Online-Only
REFERENCE 4 (bases 1 to 2735295)
AUTHORS Laye,V.J., Karan,R., Kim,J.M., Pecher,W.T., DasSarma,P. and
DasSarma,S.
TITLE Key amino acid residues conferring enhanced enzyme activity at cold
temperatures in an Antarctic polyextremophilic beta-galactosidase
JOURNAL Proc Natl Acad Sci U S A 114 (47), 12530-12535 (2017)
PUBMED 29109294
REFERENCE 5 (bases 1 to 2735295)
AUTHORS Laye,V.J. and DasSarma,S.
TITLE An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme:
Effects of Perchlorate Salts
JOURNAL Astrobiology 18 (4), 412-418 (2018)
PUBMED 29189043
REFERENCE 6 (bases 1 to 2735295)
AUTHORS DasSarma,S., DasSarma,P., Laye,V.J. and Schwieterman,E.W.
TITLE Extremophilic models for astrobiology: haloarchaeal survival
strategies and pigments for remote sensing
JOURNAL Extremophiles 24 (1), 31-41 (2020)
PUBMED 31463573
REFERENCE 7 (bases 1 to 2735295)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4001421
Source DNA available from Professor Shiladitya DasSarma
Archaea available from ATCC: ATCC 49239
Contacts: Ricardo Cavicchioli (r.cavicchioli@unsw.edu.au)
Shiladitya DasSarma (sdassarma@som.umaryland.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Halorubrum lacusprofundi ATCC 49239"
/mol_type="genomic DNA"
/strain="ATCC 49239"
/culture_collection="ATCC:49239"
/type_material="type strain of Halorubrum lacusprofundi"
/db_xref="taxon:416348"
/chromosome="1"
protein /locus_tag="Hlac_1576"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: scl:sce2138 putative multicopper oxidase"
/transl_table=11
/db_xref="InterPro:IPR002355"
BEGIN
1 MQTGTEDDGI EQVDGENSVN RRTFVQGVGM LPLSTSLLDN EEARQQLDLG NSAHGSGRTR
61 RFTIHAIEVD IVYNRFGLHQ PNGVMYVLDE NLDAVREASG ETPDDAFSLV ENETASAEQR
121 GNPNEDDGEV DTSLIEPLVI RANEGDTIQI RFVNHLDRQA SIHQTALPYN VQTSDGMAVG
181 LNPDTTAKPG GTVQYRWEAT HTGTHFFYDG ANQAVDSANE PPEEANLLSR GLFGAIAVEP
241 PGATWSDPET GGELHSGTKA VIDDPNGLGT TYREFVPFYH TPEGIEPEVQ WPSTGEEQTI
301 HAINYRADPL GQRDDEFYNS WTNGDPGGGD NVFPAYKGDP IKYTFVGASL EENHVHHLHQ
361 HRWKEVPRTA ADTIDSQTIG LGDTFDAYLV AGHGPQTNRP GLSFSEAFEV GAGYNHGSAG
421 DVLFHCHLFP HYAEGMWAIM RILDKVQPGL QPLANSSGLI QEGSDAPGYP ELVADAIKEV
481 EGVDDPIGHL APKPPLSSVN NPREPTDVER QAFGDDIVPG APYADPCTDP EPERILEYTI
541 AVMKPGNPNG IVYNDVGDHD PEGLAYVLDR VRVKAPDGTV QKDVDVDDAE LLREGKLNPE
601 PLFIRANVGD CVEVRLQNEL VEEEFHTSVH PHFVGFDQLG SESVTTGFNY EQSTDPGDTM
661 QYRWYADEEG AIFFHDHIVG VSEGMHGLFC GLLVEPERSE WTDPYSGERI FSGAQAVIDP
721 PEADAFREQA LHYHDFAQLR DPDTGEFVNP DREHNQNAGT NAINYRNSPF YHRDDEDPAY
781 VHSSQVHGDP ETPILEAYEG DKIRFRLFQG SWEEQHNFDL SGLRFDPEGF ADQDMVSQVI
841 GTSEAFTFTV RPEESQQDFK HITNPDDLPV RDYRYGSNVI DDMWTGMWGL SRIWGAEVNH
901 LQTLPGQAAP SESIAEAQLE AMGHPAPFSN FDWTEEGQRA KLRYAEGEDL TRPPDKDARQ
961 NGNVGEIPPQ APDPGDPCPD DAPVRSFDVT AFQVDIPYND YGDHDEHGVV FALDRYVDEI
1021 KNGDRPVEPL TLHANKGDCI EINLTNNLPS GLDNDHAHPK MRISQEWDRS DRISLHPVQV
1081 INDVNGSNGS TVGFNYDTTV DRGETITYRW YADVEVGTSL LWDMADVRST RHHGAFGQLV
1141 IEPQDSVTLD NRTGEVSVTS VASMIKTGNG DPDFRENALI FADGQFVLNR DDPTDCVVPP
1201 GPDIENPNDP CNQLGDSEDQ GYGGINYRSE PFSRRFEQND AQHLVYSSRV HGDPNTPIWK
1261 AATDDPVKFR VASGADKARA VAFHLAEHQW QRYQGVNESP VIGVDGQLSP GKAQTFDLLG
1321 GAGGLTGGSG SGDYIYQETK QRRRLEAGLW GIFRVRRQPD RFPDEAIQPL PDRAGAVPLA
1381 GRPGYVVRTG DVTGNGQRDV VIGVTGSDIG ATQAGAVYVF TDTNPSQVTD LSAADLQVPS
1441 ETVGEQAGTD IRLVSREGST QNIVVGTASG DQRVIEGGQP LLDLIESPPP SEVAEFVRGT
1501 TNTRVLSIVP FEMASTPMDG NGNRN
//