LOCUS ACM57091.1 1592 aa PRT BCT 01-MAR-2021
DEFINITION Halorubrum lacusprofundi ATCC 49239 glycoside hydrolase
15-related protein.
ACCESSION CP001365-1485
PROTEIN_ID ACM57091.1
SOURCE Halorubrum lacusprofundi ATCC 49239
ORGANISM Halorubrum lacusprofundi ATCC 49239
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria;
Haloferacales; Haloferacaceae; Halorubrum.
REFERENCE 1 (bases 1 to 2735295)
AUTHORS Dassarma,S., Capes,M.D., Karan,R. and Dassarma,P.
TITLE Amino acid substitutions in cold-adapted proteins from Halorubrum
lacusprofundi, an extremely halophilic microbe from antarctica
JOURNAL PLoS One 8 (3), e58587 (2013)
PUBMED 23536799
REFERENCE 2 (bases 1 to 2735295)
AUTHORS Karan,R., Capes,M.D., DasSarma,P. and DasSarma,S.
TITLE Cloning, overexpression, purification, and characterization of a
polyextremophilic beta-galactosidase from the Antarctic
haloarchaeon Halorubrum lacusprofundi
JOURNAL BMC Biotechnol 13, 3 (2013)
PUBMED 23320757
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2735295)
AUTHORS Anderson,I.J., DasSarma,P., Lucas,S., Copeland,A., Lapidus,A., Del
Rio,T.G., Tice,H., Dalin,E., Bruce,D.C., Goodwin,L., Pitluck,S.,
Sims,D., Brettin,T.S., Detter,J.C., Han,C.S., Larimer,F.,
Hauser,L., Land,M., Ivanova,N., Richardson,P., Cavicchioli,R.,
DasSarma,S., Woese,C.R. and Kyrpides,N.C.
TITLE Complete genome sequence of the Antarctic Halorubrum lacusprofundi
type strain ACAM 34
JOURNAL Stand Genomic Sci 11 (1), 70 (2016)
PUBMED 27617060
REMARK Publication Status: Online-Only
REFERENCE 4 (bases 1 to 2735295)
AUTHORS Laye,V.J., Karan,R., Kim,J.M., Pecher,W.T., DasSarma,P. and
DasSarma,S.
TITLE Key amino acid residues conferring enhanced enzyme activity at cold
temperatures in an Antarctic polyextremophilic beta-galactosidase
JOURNAL Proc Natl Acad Sci U S A 114 (47), 12530-12535 (2017)
PUBMED 29109294
REFERENCE 5 (bases 1 to 2735295)
AUTHORS Laye,V.J. and DasSarma,S.
TITLE An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme:
Effects of Perchlorate Salts
JOURNAL Astrobiology 18 (4), 412-418 (2018)
PUBMED 29189043
REFERENCE 6 (bases 1 to 2735295)
AUTHORS DasSarma,S., DasSarma,P., Laye,V.J. and Schwieterman,E.W.
TITLE Extremophilic models for astrobiology: haloarchaeal survival
strategies and pigments for remote sensing
JOURNAL Extremophiles 24 (1), 31-41 (2020)
PUBMED 31463573
REFERENCE 7 (bases 1 to 2735295)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4001421
Source DNA available from Professor Shiladitya DasSarma
Archaea available from ATCC: ATCC 49239
Contacts: Ricardo Cavicchioli (r.cavicchioli@unsw.edu.au)
Shiladitya DasSarma (sdassarma@som.umaryland.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Halorubrum lacusprofundi ATCC 49239"
/mol_type="genomic DNA"
/strain="ATCC 49239"
/culture_collection="ATCC:49239"
/type_material="type strain of Halorubrum lacusprofundi"
/db_xref="taxon:416348"
/chromosome="1"
protein /locus_tag="Hlac_1503"
/EC_number="3.2.1.3"
/inference="protein motif:PFAM:PF00723"
/note="PFAM: glycoside hydrolase 15-related; KEGG:
hwa:HQ2539A glucoamylase"
/transl_table=11
/db_xref="InterPro:IPR011613"
BEGIN
1 MRLRTALTEH ERRRGERYPA ERPTTAGAFT GDDGRLVHVG PNGTVHDCSY SLSGVGGADR
61 LRMGITAGRG VRWLDDLTTT RQHYDGDTPL VETEYDAGRY TVHQFDLVVS DTHLTHVELR
121 GAPPADAELV AACAFSPDMV EGRVGNLVHE EAGPQSGSVV EVYHRTEHDF LTASTGLSAA
181 HGQRLRTVSE LLGESGEGFP HRGEIDQRED SRLTPDVVVR APFERDGRTE RVTLASRAVL
241 DRRETRETVD DAKDAISDGP DRQRRIEELS RIATAYPDAD DLREAAEGRG PTVPDDVPRR
301 SVVAGDLRAL DLLTAESGAR IAAPEFDPFY STSGGYGYTW FRDEAETSLA LLGASDELGL
361 DADEELLATA SFFCRTQDAD GSWPHRVWAD SGKVAPGWAN ARIEGANATA GPNDQLDQPA
421 SVVAFLARLR RTTDLPPEWR DRVDDTIADA IDFLRETTEP DGLPRRCQNC WENALGRFTH
481 TGATYLRAFA AVARAPLPDD VRADAADAAD AALAGLNGRW NPDTERFPQR ASAESRDDRS
541 DASTFALASA ATEYAALRDE RNEIGADGGS TPEIDTTPAA ADVDFDAFLD RVTTHVLTTI
601 GELRRETADV EGLVRFWGDD WRTAEQGAAK VWSIATLWGA TAAAELGGLI RERDGDAADL
661 FSAARDLYAL CEPDGPFVND AGLIAEQAFD DGDLDGATPI AWSHALRIDA TVTLARHGAL
721 PVPHDEPRGP DEAPHWTTGR KFGVGTPADH KAADPVPVWF TLTEGALTEA RFPRIDVMNV
781 RTFDFLVADP ETGYTVRTFD ETSHVTATET VERTTEPTVD DALAYTQTIC ETGDGHGHSW
841 TLTVEYAVDT DGDAILADVA FEGSREYDVY ALVDTTITNV GSNDRGDRVD DSDGYHLLAR
901 NNDAAERSTG KLVDDDGDSF EVALAIDSDD GFEWASVLAA GSDKAGALFA DGDRGEGTET
961 ATGNVVLAGL VGSGTEVSDA VALGFAENAD TAAALGEARG AISRGFADIS ESYVETWREW
1021 LADRKFPASV TGDADLETQY RFALMTLAAV EDKRHDGAGI ASPSVPWGET EYAAEDRGYG
1081 YNFVWSRDLY QVFTALIEVG EVERGADALA YLYNTQQDDD GFLPQNTYID GRTRWGGEQM
1141 DNIAFPSVMA WQLYEHGISP GDTDYTYDQV RRSLGYIAAN GPETAQERWE EEAGFSPSSI
1201 AAEIAGLCCG AALAVAEADR IEAGNAGSGS GPDADSDSLR ADALAWLALA DDWTTRVEEW
1261 CATATGTERH AETPYYLRVT ADGDPESGRP RTIANDGPTY DEREIVDGGF LELVRLGVKP
1321 ADDDVVRNSV SVVDDSIRVD TPYGPAWYRY VGDAYGELAR SDPGGPWAGT GDGRGRLWPI
1381 FTGERGEYEL RARADGPDAF GGTDEDALEP DALLETMAGF GNSGRMLPEQ VWDREHPTNY
1441 GWEFGEGTGG ATPLAWSMAG FIRLAHGVEA GEPVETPTVV RDRYVERDRS ATPDLDATAE
1501 YVNNHLVVAG ETTADVVAVY TPDESALVTV EDGEYEFRLD AALDAKTVVV AAANTDGGAD
1561 DTAADAGDEA TDTDAILDEF SGAGTAVKRL RV
//