LOCUS ACM55711.1 975 aa PRT BCT 01-MAR-2021
DEFINITION Halorubrum lacusprofundi ATCC 49239 DNA-directed RNA polymerase
subunit A' protein.
ACCESSION CP001365-105
PROTEIN_ID ACM55711.1
SOURCE Halorubrum lacusprofundi ATCC 49239
ORGANISM Halorubrum lacusprofundi ATCC 49239
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria;
Haloferacales; Haloferacaceae; Halorubrum.
REFERENCE 1 (bases 1 to 2735295)
AUTHORS Dassarma,S., Capes,M.D., Karan,R. and Dassarma,P.
TITLE Amino acid substitutions in cold-adapted proteins from Halorubrum
lacusprofundi, an extremely halophilic microbe from antarctica
JOURNAL PLoS One 8 (3), e58587 (2013)
PUBMED 23536799
REFERENCE 2 (bases 1 to 2735295)
AUTHORS Karan,R., Capes,M.D., DasSarma,P. and DasSarma,S.
TITLE Cloning, overexpression, purification, and characterization of a
polyextremophilic beta-galactosidase from the Antarctic
haloarchaeon Halorubrum lacusprofundi
JOURNAL BMC Biotechnol 13, 3 (2013)
PUBMED 23320757
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2735295)
AUTHORS Anderson,I.J., DasSarma,P., Lucas,S., Copeland,A., Lapidus,A., Del
Rio,T.G., Tice,H., Dalin,E., Bruce,D.C., Goodwin,L., Pitluck,S.,
Sims,D., Brettin,T.S., Detter,J.C., Han,C.S., Larimer,F.,
Hauser,L., Land,M., Ivanova,N., Richardson,P., Cavicchioli,R.,
DasSarma,S., Woese,C.R. and Kyrpides,N.C.
TITLE Complete genome sequence of the Antarctic Halorubrum lacusprofundi
type strain ACAM 34
JOURNAL Stand Genomic Sci 11 (1), 70 (2016)
PUBMED 27617060
REMARK Publication Status: Online-Only
REFERENCE 4 (bases 1 to 2735295)
AUTHORS Laye,V.J., Karan,R., Kim,J.M., Pecher,W.T., DasSarma,P. and
DasSarma,S.
TITLE Key amino acid residues conferring enhanced enzyme activity at cold
temperatures in an Antarctic polyextremophilic beta-galactosidase
JOURNAL Proc Natl Acad Sci U S A 114 (47), 12530-12535 (2017)
PUBMED 29109294
REFERENCE 5 (bases 1 to 2735295)
AUTHORS Laye,V.J. and DasSarma,S.
TITLE An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme:
Effects of Perchlorate Salts
JOURNAL Astrobiology 18 (4), 412-418 (2018)
PUBMED 29189043
REFERENCE 6 (bases 1 to 2735295)
AUTHORS DasSarma,S., DasSarma,P., Laye,V.J. and Schwieterman,E.W.
TITLE Extremophilic models for astrobiology: haloarchaeal survival
strategies and pigments for remote sensing
JOURNAL Extremophiles 24 (1), 31-41 (2020)
PUBMED 31463573
REFERENCE 7 (bases 1 to 2735295)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4001421
Source DNA available from Professor Shiladitya DasSarma
Archaea available from ATCC: ATCC 49239
Contacts: Ricardo Cavicchioli (r.cavicchioli@unsw.edu.au)
Shiladitya DasSarma (sdassarma@som.umaryland.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Halorubrum lacusprofundi ATCC 49239"
/mol_type="genomic DNA"
/strain="ATCC 49239"
/culture_collection="ATCC:49239"
/type_material="type strain of Halorubrum lacusprofundi"
/db_xref="taxon:416348"
/chromosome="1"
protein /locus_tag="Hlac_0105"
/inference="protein motif:TFAM:TIGR02390"
/note="KEGG: hwa:HQ3394A DNA-directed RNA polymerase
subunit alpha; TIGRFAM: DNA-directed RNA polymerase
subunit A'; PFAM: RNA polymerase alpha subunit; RNA
polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1;
RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I
subunit A domain protein"
/transl_table=11
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012758"
BEGIN
1 MSMQTPKVLG GIDFGLMDPE TYRDMSATKV ITADTYNDDG YPIDMGLMDP RLGVIDPGLE
61 CRTCGSHSGS CNGHFGHIEL AAPVIHVGFT KLIRRLLRST CRECGKLALD EEQRDEFRDR
121 YERAKELGND EHDVLKAAVR QARKASTCPF CGEPQADIKH EKPTTYYEVQ DVLSGDYSER
181 IAAAMQPDEE EDDPGTSPQE LAEKTDIDLE RINEIMAGEF RPRKEDRRAI EKALDIDLTE
241 EDMNKLMPSD IRDWFEDIPD EDLEVLGIDS EHSRPEWMIL TVLPVPPVTT RPSITLDNGQ
301 RSEDDLTHKL VDIIRINQRF MENREAGAPQ LIIEDLWELL QYHVTTFVDN EISGTPPARH
361 RSGRPLKTLS QRLKGKEGRF RGSLSGKRVN FSARTVISPD PTLSLNEVGV PDRVAMEMTQ
421 TLNVTERNVE EARQYVRNGP EAHPGANYVR RPDGRRLKVT EKNCEELAEK VEADWEVNRH
481 LVDGDIVIFN RQPSLHRMSI MAHEVVVMPY KTFRLNTVVC PPYNADFDGD EMNMHALQNE
541 EARAEARVLM RVQEQILSPR FGGNIIGAIQ DHISGTYLLT HSNPEFTETQ ALDLLRATRV
601 DELPEADGVD DEGREYWTGR TLFSELLPDD LSLHFSSSTG DDVIIEDGQL IEGTIDEDAV
661 GAFGGEVVDT LTKEYGETRS RVFINEIASL AMRAIMHFGF SIGIDDESIP PEAEEQVDDA
721 IESAYDRVQE LIATYEAGEL ESLPGRGVDE TLEMKIMQTL GKARDSAGDI ADQHFGDDNP
781 AVVMARSGAR GSMLNLTQMA GSVGQQAVRG ERINRGYEDR TLSHYRPNDL SSEAHGFVEN
841 SYRSGLTPEE FFFHAMGGRE GLVDTAVRTS KSGYLQRRLI NALSELEAQY DGSVRDTSGR
901 IVQFEFGEDG TSPVKVSSGE GDGIDVDDIV DRVVDSEFDS DDEKERFLGE RTPPTNLSEH
961 SGPGLNKASG VESDD
//