LOCUS ABX70261.1 349 aa PRT BCT 31-JAN-2014 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 hypothetical protein protein. ACCESSION CP000886-4817 PROTEIN_ID ABX70261.1 SOURCE Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ORGANISM Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4858887) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Cordes,M., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Paratyphi B Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT The bacterium Salmonella Paratyphi B is host-specialized, for it grows well and causes disease only in humans, whereas most strains of Salmonella can grow in the gut of almost all animals, both domesticated and wild. Humans usually acquire Salmonella Paratyphi B by the ingestion of water or of food that has been contaminated through fecal contact with humans. Paratyphi B is quite diverse and human infection is sometimes not associated with human-to- human system infection but rather associated with food borne infection. The specific strain of S. Paratyphi that was sequenced was isolated from the stool of a female in Penang Malaysia, and was obtained from Kwai-Lin Thong. It can be obtained from the Salmonella Genetic Stock Center as SGSC4150 (www.ucalgary.ca/ kesander). The genome was sequenced to 8X coverage, using plasmid and fosmid libraries, and was manually finished. Automated annotation has been performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7" /mol_type="genomic DNA" /strain="SGSC4150; SPB7" /serovar="Paratyphi B" /sub_species="enterica" /culture_collection="ATCC:BAA-1250" /db_xref="taxon:1016998" protein /locus_tag="SPAB_04969" /inference="protein motif:Gene3D:IPR003594" /inference="protein motif:HMMPfam:IPR003594" /inference="protein motif:HMMPfam:IPR003661" /inference="protein motif:HMMPfam:IPR013656" /inference="protein motif:HMMSmart:IPR000014" /inference="protein motif:HMMSmart:IPR003594" /inference="protein motif:HMMSmart:IPR003661" /inference="protein motif:superfamily:IPR003594" /inference="protein motif:superfamily:IPR009082" /inference="similar to AA sequence:INSD:CAD03094.1" /note="KEGG: stm:STM4006 2.0e-181 glnL; sensory kinase (phosphatase) in two-component regulatory system with GlnG (nitrogen regulator II, NRII) K07708; COG: COG3852 Signal transduction histidine kinase, nitrogen specific; Psort location: CytoplasmicMembrane, score:7.88" /transl_table=11 /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR009082" /db_xref="InterPro:IPR013656" BEGIN 1 MASGIQPDAG QILNSLINSV LVVDDALAIH YANPAAQQLL AQSSRKLFGT PLPELLSYFS 61 LNIDLMRESL AAGQGFTDNE VTLVIDSRSH ILSLTAQRLP DDFILLEMAP MDNQRRLSQE 121 QLQHAQQIAA RDLVRGLAHE IKNPLGGLRG AAQLLSKALP DPALMEYTKV IIEQADRLRN 181 LVDRLLGPQH PGMHITESIH KVAERVVALV SMELPDNVRL IRDYDPSLPE LPHDPEQIEQ 241 VLLNIVRNAL QALGPDGGEI TLRTRTAFQL TLHGERYRLA ARIDVEDNGP GIPPHLQDTL 301 FYPMVSGREG GTGLGLSIAR NLIDQHAGKI EFTSWPGHTE FSVYLPIRK //