LOCUS ABX68431.1 833 aa PRT BCT 31-JAN-2014 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 hypothetical protein protein. ACCESSION CP000886-2987 PROTEIN_ID ABX68431.1 SOURCE Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ORGANISM Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4858887) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Cordes,M., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Paratyphi B Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT The bacterium Salmonella Paratyphi B is host-specialized, for it grows well and causes disease only in humans, whereas most strains of Salmonella can grow in the gut of almost all animals, both domesticated and wild. Humans usually acquire Salmonella Paratyphi B by the ingestion of water or of food that has been contaminated through fecal contact with humans. Paratyphi B is quite diverse and human infection is sometimes not associated with human-to- human system infection but rather associated with food borne infection. The specific strain of S. Paratyphi that was sequenced was isolated from the stool of a female in Penang Malaysia, and was obtained from Kwai-Lin Thong. It can be obtained from the Salmonella Genetic Stock Center as SGSC4150 (www.ucalgary.ca/ kesander). The genome was sequenced to 8X coverage, using plasmid and fosmid libraries, and was manually finished. Automated annotation has been performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7" /mol_type="genomic DNA" /strain="SGSC4150; SPB7" /serovar="Paratyphi B" /sub_species="enterica" /culture_collection="ATCC:BAA-1250" /db_xref="taxon:1016998" protein /locus_tag="SPAB_03068" /inference="protein motif:HMMPanther:IPR001757" /inference="protein motif:HMMPfam:IPR005834" /inference="protein motif:HMMPfam:IPR006121" /inference="protein motif:HMMPfam:IPR008250" /inference="protein motif:HMMTigr:IPR001757" /inference="protein motif:HMMTigr:IPR006403" /inference="protein motif:HMMTigr:IPR006416" /inference="protein motif:ScanRegExp:IPR000150" /inference="protein motif:ScanRegExp:IPR001757" /inference="protein motif:ScanRegExp:IPR006121" /inference="protein motif:superfamily:IPR006121" /note="KEGG: sty:STY0544 0. ybaR; copper-transporting ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score:10.00" /transl_table=11 /db_xref="InterPro:IPR000150" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006403" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" BEGIN 1 MSQTIDLTLD GLSCGHCVKR VKESLEQRPD VELADVTVTE AHVTGTASAD ALIETIKQAG 61 YGATLSHPKA KPLTESSIPS EALAAVPHEL PVATADEESQ QLLLSGMSCA SCVTRVQHAL 121 QSVPGVTQAR VNLAERTALV MGRASAADLV QAVEKAGYGA EAIEDDIKRR ERQQETAIAT 181 MKRFRWQAIV ALAVGIPVMV WGMIGDNMMV TGDNRSLWLA IGLITLAVMV FAGGHFYRNA 241 WKSLLNGTAT MDTLVALGTG VAWLYSMSVN LWPQWFPMEA RHLYYEASAM IIGLINLGHM 301 LEARARQRSS KALEKLLDLT PPTARVVTED GEKSVPLADV QPGMLLRLTT GDRVPVDGEI 361 TQGEAWLDEA MLTGEPIPQQ KGEGDSVHAG TVVQDGSVLF RASAVGSHTT LSRIIRMVRQ 421 AQSSKPEIGQ LADKISAVFV PVVVAIALFS AAIWYFFGPA PQIVYTLVIA TTVLIIACPC 481 ALGLATPMSI ISGVGRAAEF GVLVRDADAL QRASTLDTLV FDKTGTLTEG KPQVVAIKTF 541 NGVEEAQALR LAAALEQGSS HPLAHAILEK AGDDKLPQVN GFRTLRGLGV SGEAEGHQLL 601 LGNQALLNEQ HVATDDMTAE ITAQASQGST PVLLAIDGKA AALLAVRDPL RSDSIAALER 661 LHNAGYRLVM LTGDNPTTAN AIAKEAGIDE VIAGVLPDGK ADAIKRLQSQ GRQVAMVGDG 721 INDAPALAQA DVGIAMGGGS DVAIETAAIT LMRHSLMGVA DALAISRATL RNMKQNLLGA 781 FIYNSIGIPV AAGILWPFTG TLLNPVVAGA AMALSSITVV SNANRLLRFK PKA //