LOCUS ABX68170.1 933 aa PRT BCT 31-JAN-2014
DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi
B str. SPB7 hypothetical protein protein.
ACCESSION CP000886-2726
PROTEIN_ID ABX68170.1
SOURCE Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
ORGANISM Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4858887)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,R., Cordes,M., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Salmonella enterica serovar Paratyphi B Genome Sequencing
Project
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT The bacterium Salmonella Paratyphi B is host-specialized, for it
grows well and causes disease only in humans, whereas most strains
of Salmonella can grow in the gut of almost all animals, both
domesticated and wild. Humans usually acquire Salmonella Paratyphi
B by the ingestion of water or of food that has been contaminated
through fecal contact with humans. Paratyphi B is quite diverse
and human infection is sometimes not associated with human-to-
human system infection but rather associated with food borne
infection.
The specific strain of S. Paratyphi that was sequenced was isolated
from the stool of a female in Penang Malaysia, and was obtained
from Kwai-Lin Thong. It can be obtained from the Salmonella Genetic
Stock Center as SGSC4150 (www.ucalgary.ca/
kesander). The genome was sequenced to 8X coverage, using plasmid
and fosmid libraries, and was manually finished. Automated
annotation has been performed and manual annotation will continue
in the labs of Michael McClelland and Kenneth Sanderson. The
National Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7"
/mol_type="genomic DNA"
/strain="SGSC4150; SPB7"
/serovar="Paratyphi B"
/sub_species="enterica"
/culture_collection="ATCC:BAA-1250"
/db_xref="taxon:1016998"
protein /locus_tag="SPAB_02798"
/inference="protein motif:HMMPfam:IPR001017"
/inference="protein motif:HMMPfam:IPR005475"
/inference="protein motif:HMMPIR:IPR011603"
/inference="protein motif:HMMTigr:IPR011603"
/inference="protein motif:superfamily:IPR009014"
/note="KEGG: sec:SC0740 0. sucA; 2-oxoglutarate
dehydrogenase (decarboxylase component) K00164; COG:
COG0567 2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, and related enzymes; Psort
location: Cytoplasmic, score:9.26"
/transl_table=11
/db_xref="InterPro:IPR001017"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR009014"
/db_xref="InterPro:IPR011603"
BEGIN
1 MQNSALKAWL DSSYLSGSNQ SWIEQLYEDF LTDPDSVDAN WRLTFQQLPG TGVKPDQLHS
61 KTREYFRRQA LAGSRHSSTI SDPDTNVKQV KVLQLINAYR FRGHQHANLD PLGLWKQERV
121 ADLDPSFHDL TEADFQETFN VGSFASGKET MKLGELLDAL KQTYCGPIGA EYMHITSTEE
181 KRWIQQRIES GRAAFSADEK KRFLNELTAA EGLERYLGAK FPGAKRFSLE GGDALIPMLK
241 EMVRHAGNSG TREVVLGMAH RGRLNVLINV LGKKPQDLFD EFAGKHKEHL GTGDVKYHMG
301 FSSDIETEGG LVHLALAFNP SHLEIVSPVV MGSVRARLDR LDEPSSNKVL PITIHGDAAV
361 TGQGVVQETL NMSKARGYEV GGTVRIVINN QVGFTTSNPL DARSTPYCTD IGKMVQAPIF
421 HVNADDPEAV AFVTRLALDF RNTFKRDVFI DLVCYRRHGH NEADEPSATQ PLMYQKIKKH
481 PTPRKIYADK LEADKVATLE DATEMVNLYR DALDAGECVV KEWRPMNMHS FTWSPYLNHE
541 WDESYPNKVE MKRLQELAKR ISTVPEAIEM QSRVAKIYGD RQAMAAGEKL FDWGGAENLA
601 YATLVDEGIP VRLSGEDSGR GTFFHRHAVI HNQTNGSTYT PLQHIHSGQG QFKVWDSVLS
661 EEAVLAFEYG YATAEPRTLT IWEAQFGDFA NGAQVVIDQF ISSGEQKWGR MCGLVMLLPH
721 GYEGQGPEHS SARLERYLQL CAEQNMQVCV PSTPAQVYHM LRRQALRGMR RPLVVMSPKS
781 LLRHPLAVST LDELANGSFQ PAIGEIDELD PKAVKRVVMC SGKVYYDLLE QRRKNDQKDV
841 AIVRIEQLYP FPHKAVQEAL QPYAHVHDFV WCQEEPLNQG AWYCSQHHFR EVIPFGAALR
901 YAGRPASASP AVGYMSVHQK QQQDLVNDAL NVD
//