LOCUS ABX67550.1 577 aa PRT BCT 31-JAN-2014
DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi
B str. SPB7 hypothetical protein protein.
ACCESSION CP000886-2106
PROTEIN_ID ABX67550.1
SOURCE Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
ORGANISM Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4858887)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,R., Cordes,M., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Salmonella enterica serovar Paratyphi B Genome Sequencing
Project
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT The bacterium Salmonella Paratyphi B is host-specialized, for it
grows well and causes disease only in humans, whereas most strains
of Salmonella can grow in the gut of almost all animals, both
domesticated and wild. Humans usually acquire Salmonella Paratyphi
B by the ingestion of water or of food that has been contaminated
through fecal contact with humans. Paratyphi B is quite diverse
and human infection is sometimes not associated with human-to-
human system infection but rather associated with food borne
infection.
The specific strain of S. Paratyphi that was sequenced was isolated
from the stool of a female in Penang Malaysia, and was obtained
from Kwai-Lin Thong. It can be obtained from the Salmonella Genetic
Stock Center as SGSC4150 (www.ucalgary.ca/
kesander). The genome was sequenced to 8X coverage, using plasmid
and fosmid libraries, and was manually finished. Automated
annotation has been performed and manual annotation will continue
in the labs of Michael McClelland and Kenneth Sanderson. The
National Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7"
/mol_type="genomic DNA"
/strain="SGSC4150; SPB7"
/serovar="Paratyphi B"
/sub_species="enterica"
/culture_collection="ATCC:BAA-1250"
/db_xref="taxon:1016998"
protein /locus_tag="SPAB_02167"
/inference="protein motif:HMMPfam:IPR005021"
/note="COG: COG4626 Phage terminase-like protein, large
subunit"
/transl_table=11
/db_xref="InterPro:IPR005021"
BEGIN
1 MSRKSYPNVN AANQYARNVV RGKITACQYV IQACQRHIDD MAAEKSKRFR YRFDKDMAEK
61 AAKFIQLLPH TKGEWAFKRM PITLEPWQLF IVCCAFGWVQ KGTKLRRFRE VYTEIPRKNG
121 KSAISAGVAL YCFTCDNEFG AEVYSGATTE KQAWEVFRPA RLMCKRTPLL VEAFGIEVNA
181 SNLNRPEDGA RFEPLIGNPG DGASPHCAIV DEYHEHPTDA LYTTMLTGMG ARRQPLMWAI
241 TTAGYNIEGP CYDKRREVIE MLNGSVPNNE LFGVIYTVDE GDDWTDPKVL EKANPNIGVS
301 VYRDFLLSQQ QRAINNARHA GVFKTKHLNV WVAARTAFFN LVSWQNCEDK TLTLELFEGQ
361 PCVLAFDLAR KLDMNSMARL FTREIDGKTH FYSVAPRFWV PYDTVYSVEK NEDRRTAERF
421 QKWVEMGFLT VTDGAEVDYR YILEEAKAAN KLNPVSESPI DPFGATGLSH DLADENLNPV
481 TIIQNYTNMS DPMKELEAAI ESGRFHHDGN PIMTWCIGNV VGKTIPGNDD VVKPIKEQAE
541 NKIDGAVALI MAVGRAMLYE KADTLSDHIE SYGIRSL
//