LOCUS ABX23334.1 1380 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-3380 PROTEIN_ID ABX23334.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_03509" /inference="protein motif:HMMPfam:IPR007120" /inference="protein motif:HMMPfam:IPR007641" /inference="protein motif:HMMPfam:IPR007642" /inference="protein motif:HMMPfam:IPR007644" /inference="protein motif:HMMPfam:IPR007645" /inference="protein motif:HMMTigr:IPR010243" /inference="protein motif:ScanRegExp:IPR007121" /note="KEGG: sec:SC4037 0. rpoB; RNA polymerase, beta subunit K03043; COG: COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; Psort location: Cytoplasmic, score:9.97" /transl_table=11 /db_xref="InterPro:IPR007120" /db_xref="InterPro:IPR007121" /db_xref="InterPro:IPR007641" /db_xref="InterPro:IPR007642" /db_xref="InterPro:IPR007644" /db_xref="InterPro:IPR007645" /db_xref="InterPro:IPR010243" BEGIN 1 MIATGIAESI HFPVNKIVLH KLSPAGQMGR LVSELRNPMV YSYTEKKRIR KDFGKRPQVL 61 DVPYLLSIQL DSFQKFIEQD PEGQYGLEAA FRSVFPIQSY SGNSELQYVS YRLGEPVFDV 121 QECQIRGVTY SAPLRVKLRL VIYEREAPEG TVKDIKEQEV YMGEIPLMTD NGTFVINGTE 181 RVIVSQLHRS PGVFFDSDKG KTHSSGKVLY NARIIPYRGS WLDFEFDPKD NLFVRIDRRR 241 KLPATIILRA LNYTTEQILD LFFEKVVFEI RDNKLQMELI PERLRGETAS FDIEANGKVY 301 VEKGRRITAR HIRQLEKDDI KHIEVPVEYI AGKVVSKDYV DESTGELICA ANMELSLDLL 361 AKLSQSGHKR IETLFTNDLD HGPYISETVR VDPTNDRLSA LVEIYRMMRP GEPPTREAAE 421 SLFENLFFSE DRYDLSAVGR MKFNRSLLRD EIEGSGILSK DDIIDVMKKL IDIRNGKGEV 481 DDIDHLGNRR IRSVGEMAEN QFRVGLVRVE RAVKERLSLG DLDTLMPQDM INAKPISAAV 541 KEFFGSSQLS QFMDQNNPLS EITHKRRISA LGPGGLTRER AGFEVRDVHP THYGRVCPIE 601 TPEGPNIGLI NSLSVYAQTN EYGFLETPYR RVVDGVVTDE IHYLSAIEEG NYVIAQANSN 661 LDDEGHFVED LVTCRSKGES SLFSRDQVDY MDVSTQQVVS VGASLIPFLE HDDANRALMG 721 ANMQRQAVPT LRADKPLVGT GMERAVAVDS GVTAVAKRGG TVQYVDASRI VIKVNEDEMY 781 PGEAGIDIYN LTKYTRSNQN TCINQMPCVS LGEPVERGDV LADGPSTDLG ELALGQNMRV 841 AFMPWNGYNF EDSILVSERV VQEDRFTTIH IQELACVSRD TKLGPEEITA DIPNVGEAAL 901 SKLDESGIVY IGAEVTGGDI LVGKVTPKGE TQLTPEEKLL RAIFGEKASD VKDSSLRVPN 961 GVSGTVIDVQ VFTRDGVEKD KRALEIEEMQ LKQAKKDLSE ELQILEAGLF SRIRAVLVSG 1021 GVEAEKLDKL PRDRWLELGL TDEEKQNQLE QLAEQYDELK HEFEKKLEAK RRKITQGDDL 1081 APGVLKIVKV YLAVKRRIQP GDKMAGRHGN KGVISKINPI EDMPYDENGT PVDIVLNPLG 1141 VPSRMNIGQI LETHLGMAAK GIGDKINAML KQQQEVAKLR EFIQRAYDLG ADVRQKVDLS 1201 TFSDDEVLRL AENLRKGMPI ATPVFDGAKE AEIKELLKLG DLPTSGQITL FDGRTGEQFE 1261 RPVTVGYMYM LKLNHLVDDK MHARSTGSYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG 1321 AAYTLQEMLT VKSDDVNGRT KMYKNIVDGN HQMEPGMPES FNVLLKEIRS LGINIELEDE //