LOCUS ABX23333.1 1407 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-3378 PROTEIN_ID ABX23333.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_03508" /inference="protein motif:Gene3D:IPR000722" /inference="protein motif:HMMPfam:IPR000722" /inference="protein motif:HMMPfam:IPR007066" /inference="protein motif:HMMPfam:IPR007080" /inference="protein motif:HMMPfam:IPR007081" /inference="protein motif:HMMPfam:IPR007083" /inference="protein motif:HMMSmart:IPR006592" /inference="protein motif:HMMTigr:IPR012754" /note="KEGG: stm:STM4154 0. rpoC; RNA polymerase, beta prime subunit K03046; COG: COG0086 DNA-directed RNA polymerase, beta subunit/160 kD subunit; Psort location: Cytoplasmic, score:9.97" /transl_table=11 /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012754" BEGIN 1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR 61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL 121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM 181 GAEAIQALLK SMDLEQECET LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT 241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY 361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP 421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA 481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG 541 LASLHARVKV RITEYEKDEN GEFVATTSLK DTTVGRAILW MIVPKGLPFS IVNQALGKKA 601 ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE 661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEQQVSFN 721 SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR 781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI LMTPVIEGGD VKEPLRDRVL 841 GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEANSVDAV KVRSVVSCDT DFGVCAHCYG 901 RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL 961 SNVKSVVNSS GKLVITSRNT ELKLLDEFGR TKESYKVPYG AVMAKGDGEQ VAGGETVANW 1021 DPHTMPVITE VSGFIRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTTG GKDLRPALKI 1081 VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR 1141 VADLFEARRP KEPAILAEIA GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE 1201 GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM 1261 LRKATIESAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TFSRDLLGIT KASLATESFI 1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEQPA 1381 TPQVTAEDAS ASLAELLNAG LGGSDNE //