LOCUS ABX23253.1 941 aa PRT BCT 09-NOV-2020
DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23:
- hypothetical protein protein.
ACCESSION CP000880-3299
PROTEIN_ID ABX23253.1
SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4600800)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar
62:z4,z23:--Most bacteria in the species S. enterica belong to one
of seven subspecies; all but subspecies I normally grow only in
cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally
found in reptiles, but also causes outbreaks of salmonellosis in
turkeys and sheep and can occasionally produce both gastroenteritis
and serious disseminated disease in humans. Many human infections
can be traced to contact with reptiles or ingestion of various
reptile products, particularly from rattlesnakes. Fewer than ten
cases in humans are typically reported in the US each year.
The strain of S. Arizonae (62:z4,z23:-) being sequenced is
CDC346-86; it was named RSK2980 by R.K. Selander and is strain
SARC5 of the Salmonella Reference C set. This serovar is of
interest because of its taxonomic position. It appears to be the
most divergent subspecies among the S. enterica. It can be obtained
from the American Type Culture Collection as ATCC BAA-731, or the
Salmonella Genetic Stock Centre as SGSC4693. The genome was
sequenced to 8X coverage, using plasmid and fosmid libraries and
was finished to an error rate of less than 1 per 10,000 bases.
Automated annotation was performed and manual annotation will
continue in the labs of Michael McClelland and Kenneth Sanderson.
The National Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. arizonae serovar
62:z4,z23:-"
/mol_type="genomic DNA"
/strain="RSK2980"
/serovar="62:z4,z23:-"
/sub_species="arizonae"
/culture_collection="ATCC:BAA-731"
/db_xref="taxon:41514"
protein /locus_tag="SARI_03424"
/inference="protein motif:HMMPfam:IPR003439"
/inference="protein motif:HMMTigr:IPR004602"
/inference="protein motif:ScanRegExp:IPR003439"
/note="KEGG: reh:H16_A0400 0. uvrA1; excinuclease ABC,
ATPase subunit (A) K01529; COG: COG0178 Excinuclease
ATPase subunit; Psort location: CytoplasmicMembrane,
score:7.88"
/transl_table=11
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR004602"
BEGIN
1 MDKIEVRGAR THNLKNINLV IPRDKLIVVT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
61 ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIHDYLRL LFARVGEPRC
121 PDHDVPLAAQ TVSQMVDNVL SQPEGKRLML LAPIIKERKG EHTKTLENLA SQGYIRARID
181 GEVCDLSDPP KLELQKKHTI EVVIDRFKVR NDLSQRLAES FETALELSGG TAVVADMDDE
241 KAEELLFSAN FACPICGYSM RELEPRLFSF NNPAGACPTC DGLGVQQYFD PDRVIQNPDL
301 SLAGGAIRGW DRRNFYYFQM LKSLAEHYKF DVDAPWASLS ANVHKVVLYG SGKENIEFKY
361 MNDRGDTSVR RHPFEGVLHN MERRYKETES SAVREELAKF ISNRPCASCE GTRLNREARH
421 VFVENTPLPA ISDMSIGHAM DFFTNLKLSG QRAKIAEKVL KEIGDRLKFL VNVGLNYLTL
481 SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLGT LIHLRDLGNT
541 VIVVEHDEDA IRAADHVIDI GPGAGVHGGE VVAEGPLEAI MAVPESLTGQ YMSGKRKIEV
601 PKQRVPANPE KVLKLTGARG NNLKDVTLTL PVGLFTCITG VSGSGKSTLI NDTLFPIAQR
661 QLNGATIAEP APYRDIQGLE HFDKVIDIDQ SPIGRTPRSN PATYTGVFTP VRELFAGVPE
721 SRSRGYTPGR FSFNVRGGRC EACQGDGVIK VEMHFLPDIY VPCDQCKGKR YNRETLEIKY
781 KGKTIHEVLD MTIEEAREFF DAVPALARKL QTLMDVGLTY IRLGQSATTL SGGEAQRVKL
841 ARELSKRGTG QTLYILDEPT TGLHFADIQQ LLDVLHQLRD QGNTIVVIEH NLDVIKTADW
901 IVDLGPEGGS GGGEILVSGT PETVAECEAS HTARFLKPML K
//