LOCUS ABX22794.1 956 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-2840 PROTEIN_ID ABX22794.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_02948" /inference="protein motif:FPrintScan:IPR002301" /inference="protein motif:HMMPfam:IPR002300" /inference="protein motif:HMMPfam:IPR010663" /inference="protein motif:HMMPfam:IPR013155" /inference="protein motif:HMMTigr:IPR002301" /inference="protein motif:ScanRegExp:IPR001412" /inference="protein motif:superfamily:IPR009008" /inference="protein motif:superfamily:IPR009080" /note="KEGG: sec:SC0040 0. ileS; isoleucine tRNA synthetase K01870; COG: COG0060 Isoleucyl-tRNA synthetase; Psort location: Cytoplasmic, score:9.26" /transl_table=11 /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002300" /db_xref="InterPro:IPR002301" /db_xref="InterPro:IPR009008" /db_xref="InterPro:IPR009080" /db_xref="InterPro:IPR010663" /db_xref="InterPro:IPR013155" BEGIN 1 MFIKPKYGTE NLMSDYKSTL NLPETGFPMR GDLAKREPGM LARWTDDDLY GIIRAAKKGK 61 KTFILHDGPP YANGSIHIGH SVNKILKDII VKSKGLSGFD SPYVPGWDCH GLPIELKVEQ 121 EYGKPGEKFT AAEFRAKCRE YAATQVDGQR KDFIRLGVLG DWSHPYLTMD FKTEANIIRA 181 LGKIISNGHL HKGAKPVHWC VDCRSALAEA EVEYYDKTSP SIDVAFRAVD QDAVKAKFGL 241 PGVSGPISLV IWTTTPWTLP ANRAISLAPD FDYALVQVDG QALILAKDLV ESVMQRIGAA 301 DYTLLGTVKG AELELLRFTH PFMSFDVPAI LGDHVTLDAG TGAVHTAPGH GPDDYVIGQK 361 YGLETANPVG PDGAYLPGTY PTLDGVNVFK ANDIVIELLK EKGVLLHVEK MQHSYPCCWR 421 HKTPIIFRAT PQWFVSMDKE GLRQQSLKEI NGVQWIPDWG QARIESMVAN RPDWCISRQR 481 TWGVPMSLFV HKETQELLPI ERTLAAMEEV AKRVEVDGIQ AWWDLDPKEI LGEDADQYEK 541 VPDTLDVWFD SGSTSYSVVD ARPEFAGHAA DMYLEGSDQH RGWFMSSLMI SVAMKGKAPY 601 RQVLTHGFTV DGQGRKMSKS IGNTVSPQDV MNKLGADILR LWVASTDYTG EMAVSDEILK 661 RAADSYRRIR NTARFLLANL NGFNPATDMV KPEEMVVLDR WAVGCAKTAQ EEILKAYEAY 721 DFHEVVQRLM RFCSVEMGSF YLDIIKDRQY TAKADSVARR SCQTALYHIA EALVRWMAPI 781 MSFTADEIWG YLPGEREKYV FTGEWYDGLF GLEENEEFND AFWDDVRYIK DQVNKELENQ 841 KANGIKSNLE AKVTLKYADD ANGTIKKLKL LGEEVRFIFI TSQFVISEQP GGIDDENIQY 901 NAGNTTVQAV VTRAEGDKCP RCWHYTTDVG KVAEHADICG RCVSNIAGNG EQRKFA //