LOCUS ABX22620.1 1144 aa PRT BCT 09-NOV-2020
DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23:
- hypothetical protein protein.
ACCESSION CP000880-2666
PROTEIN_ID ABX22620.1
SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4600800)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K.,
Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar
62:z4,z23:--Most bacteria in the species S. enterica belong to one
of seven subspecies; all but subspecies I normally grow only in
cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally
found in reptiles, but also causes outbreaks of salmonellosis in
turkeys and sheep and can occasionally produce both gastroenteritis
and serious disseminated disease in humans. Many human infections
can be traced to contact with reptiles or ingestion of various
reptile products, particularly from rattlesnakes. Fewer than ten
cases in humans are typically reported in the US each year.
The strain of S. Arizonae (62:z4,z23:-) being sequenced is
CDC346-86; it was named RSK2980 by R.K. Selander and is strain
SARC5 of the Salmonella Reference C set. This serovar is of
interest because of its taxonomic position. It appears to be the
most divergent subspecies among the S. enterica. It can be obtained
from the American Type Culture Collection as ATCC BAA-731, or the
Salmonella Genetic Stock Centre as SGSC4693. The genome was
sequenced to 8X coverage, using plasmid and fosmid libraries and
was finished to an error rate of less than 1 per 10,000 bases.
Automated annotation was performed and manual annotation will
continue in the labs of Michael McClelland and Kenneth Sanderson.
The National Institute of Allergy and Infectious Diseases (NIAID),
National Institutes of Health (NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. arizonae serovar
62:z4,z23:-"
/mol_type="genomic DNA"
/strain="RSK2980"
/serovar="62:z4,z23:-"
/sub_species="arizonae"
/culture_collection="ATCC:BAA-731"
/db_xref="taxon:41514"
protein /locus_tag="SARI_02771"
/inference="protein motif:HMMPfam:IPR004013"
/inference="protein motif:HMMPfam:IPR004365"
/inference="protein motif:HMMPfam:IPR011708"
/inference="protein motif:HMMSmart:IPR003141"
/inference="protein motif:HMMTigr:IPR004805"
/inference="protein motif:superfamily:IPR008994"
/note="KEGG: stm:STM0231 0. dnaE; DNA polymerase III,
alpha subunit K02337; COG: COG0587 DNA polymerase III,
alpha subunit; Psort location: Cytoplasmic, score:9.97"
/transl_table=11
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR008994"
/db_xref="InterPro:IPR011708"
BEGIN
1 MIDGLAKTGP LVKKAASLGM PALAITDFTN LCGLVKFYGA GHGAGIKPIV GADFNVHNEL
61 LGDELTHLTV LASDNTGYQN LTLLISKAYQ RGYGASGPIV DRDWLIELKE GLILLSGGRM
121 GDVGRCLLRG NQALVEECVA FYEAHFPDRY FLELIRTGRQ DEETYLHAAV ELAEARGLPV
181 VATNDVRFLE SDDFDAHEIR VAIHDGFTLD DPKRPRNYSP QQYMRSIDEM CELFADIPEA
241 LENTVEIAKR CNVTVRLGEY FLPQFPTGDM TTEDYLVKKS KEGLEERLAF LFPDEEERKK
301 RRPEYDERLN IELQVINQMG FPGYFLIVME FIQWSKDNGV PVGPGRGSGA GSLVAYALKI
361 TDLDPLEFDL LFERFLNPER VSMPDFDVDF CMEKRDQVIE HVADMYGRDA VSQIITFGTM
421 AAKAVIRDVG RVLGHPYGFV DRISKLVPPD PGMTLAKAFE AEPQLPEIYE ADEEVRALID
481 MARKLEGVTR NAGKHAGGVV IAPTKITDFA PLYCDEEGKH PVTQFDKSDV EYAGLVKFDF
541 LGLRTLTIIN WALEMINKRR EKNGEPPLDI AAIPLDDKKS FDMLQRSETT AVFQLESRGM
601 KDLIKRLQPD CFEDMIALVA LFRPGPLQSG MVDNFIDRKH GREELSYPDV QWQHESLKPV
661 LEPTYGIILY QEQVMQIAQV LSGYTLGGAD MLRRAMGKKK PEEMAKQRSV FEEGAKKNGI
721 DGELAMKIFD LVEKFAGYGF NKSHSAAYAL VSYQTLWLKA HYPAEFMAAV MTADMDNTEK
781 VVGLVDECWR MGLKILPPDI NSGLYHFHVN DEGEIVYGIG AIKGVGEGPI EAIIDARNQG
841 GYFRELFDLC ARTDTKKLNR RVLEKLIMSG AFDRLGPHRA ALMNSLGDAL KAADQHAKAE
901 AIGQTDMFGV LAEEPEQIEQ SYASCQPWPE QMVLDGERET LGLYLTGHPI NQYLKEIERY
961 VGGVRLKDMH PTERGKVTTA AGLVIAARVM VTKRGNRIGI CTLDDRSGRL EVMLFTDALD
1021 KYQQLLEKDR ILIVSGQVSF DDFSGGLKMT AREVMDIDEA REKYARGLAI SLTDRQIDDQ
1081 LLNRLRQSLE PHRSGTIPVH LYYQRADARA RLRFGATWRV SPSDRLLNDL RGLIGSEQVE
1141 LEFD
//