LOCUS ABX22270.1 870 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-2316 PROTEIN_ID ABX22270.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_02408" /inference="protein motif:HMMPfam:IPR000015" /inference="protein motif:ScanRegExp:IPR000015" /inference="protein motif:ScanRegExp:IPR001862" /inference="protein motif:superfamily:IPR008985" /note="COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00" /transl_table=11 /db_xref="InterPro:IPR000015" /db_xref="InterPro:IPR001862" /db_xref="InterPro:IPR008985" BEGIN 1 MKKTTWFAGR FPGYVSPLSG VALLVLAALY PLTSRGESYF NPAFLSADTA SVADLSRFEK 61 GNHQPPGIYR VDIWRNDEFV ATQDIRFEAG TVGTGDKSGG LMPCFTPEWM KRLGVNTAAF 121 PVSDKGVDST CIHLPEKIPG AEVAFDFASM RLNISLPQAS MLNSARGYIP PEEWDEGIPA 181 ALINYSFTGS RGTDSDSYFL SLLSGLNYGP WRLRNNGAWN YSKGDGYHSQ RWNNIGTWVQ 241 RAIIPLKSEL VMGDSNTGND VFDSVGFRGA RLYSSDNMYP DSLQGYAPTV RGIARTAAKL 301 TIRQNGYVIY QSYVSPGAFA ITDLNPTSSS GDLEVTVDEK DGSQQRYTVP YSTVPLLQRE 361 GRVKYDLVAG DLRSGNSQQS SPFFFQGTVI AGLPAGITAY GGTQLADRYR AVVVGAGRNL 421 GDWGAVSIDV THARSQLADD STYQGQSLRF LYAKSLNNYG THFQLLGYRY STRGFYTLDD 481 VAYRSMEGYD YEYDSDGRRH NVLVAQSYHN LRYSKKDRFQ VNISQNLGDY GSLYLSGSQQ 541 NYWNMSDTNT WYQLGYASGW QGISYSLSWS WNESVGISGT DRILAFNMSV PFSVLTGRRY 601 ARDNILDRTY ATFNANRNRD GDNSWQTGVG GTLLEGRNLS YSVTQGRSST NGYSGRASAN 661 WQAKYGTLGV GYNYDRDQHD YNWQLSGGVV GHADGITFSQ PLGDTNVLIK APGAKGVRIE 721 NQTGVKTDWR GYAVMPYATV YRYNRVALDT NTMDNHTDVE NNVSSVVPTQ GALVRAAFDT 781 RIGVRAIITV RLDERPLPFG AIVRETASGV TSMVGDDGQI YLSGLPLKGE LLIQWGEGKN 841 ARCLAPYALA EDSLKQAITI ASATCIRPSS //