LOCUS ABX21629.1 1384 aa PRT BCT 09-NOV-2020 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23: - hypothetical protein protein. ACCESSION CP000880-1675 PROTEIN_ID ABX21629.1 SOURCE Salmonella enterica subsp. arizonae serovar 62:z4,z23:- ORGANISM Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4600800) AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J., Clifton,W.S., Fulton,R., Chunyan,W., Wollam,A., Shah,N., Pepin,K., Bhonagiri,V., Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R. CONSRTM The Salmonella enterica serovar Arizonae Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (02-NOV-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Salmonella enterica subspecies IIIa (Arizonae) serovar 62:z4,z23:--Most bacteria in the species S. enterica belong to one of seven subspecies; all but subspecies I normally grow only in cold-blooded animals. Subspecies IIIa (S. Arizonae) is naturally found in reptiles, but also causes outbreaks of salmonellosis in turkeys and sheep and can occasionally produce both gastroenteritis and serious disseminated disease in humans. Many human infections can be traced to contact with reptiles or ingestion of various reptile products, particularly from rattlesnakes. Fewer than ten cases in humans are typically reported in the US each year. The strain of S. Arizonae (62:z4,z23:-) being sequenced is CDC346-86; it was named RSK2980 by R.K. Selander and is strain SARC5 of the Salmonella Reference C set. This serovar is of interest because of its taxonomic position. It appears to be the most divergent subspecies among the S. enterica. It can be obtained from the American Type Culture Collection as ATCC BAA-731, or the Salmonella Genetic Stock Centre as SGSC4693. The genome was sequenced to 8X coverage, using plasmid and fosmid libraries and was finished to an error rate of less than 1 per 10,000 bases. Automated annotation was performed and manual annotation will continue in the labs of Michael McClelland and Kenneth Sanderson. The National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) has funded this project. Coding sequences below are predicted using GeneMark v3.3 and Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data(i.e., phred quality >=30);an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. arizonae serovar 62:z4,z23:-" /mol_type="genomic DNA" /strain="RSK2980" /serovar="62:z4,z23:-" /sub_species="arizonae" /culture_collection="ATCC:BAA-731" /db_xref="taxon:41514" protein /locus_tag="SARI_01743" /inference="protein motif:HMMPfam:IPR000710" /inference="protein motif:HMMPfam:IPR005546" /inference="protein motif:HMMTigr:IPR006315" /inference="protein motif:superfamily:IPR009003" /inference="protein motif:superfamily:IPR011050" /note="KEGG: nma:NMA0905 5.0e-94 iga; IgA1 protease K01347; COG: COG3468 Type V secretory pathway, adhesin AidA" /transl_table=11 /db_xref="InterPro:IPR000710" /db_xref="InterPro:IPR005546" /db_xref="InterPro:IPR006315" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR011050" BEGIN 1 MNKIYALKYS VRQGALVPVS ELATHAKKSS RTGLIKRLIP SVIINTLLLG YSVTSLASVV 61 RYDIPYQTIR DFAENKGQFT PGSMNIPVYS KTGTVIGYLN NAPMPDFSSA NHQSAVATLV 121 SPQYIMSVKH NGGYQSVSFG DGENGYRLVD RNNQPGRDFH APRLNKLVTE VEPSLMTQSG 181 MVSGAYSDKN RYPAFYRVGS GTQEIKETDG HIISISGAYS YLTGGTAGAP GSYNQGQMIS 241 TNTNKELYSL AQGPMGTHPR VGDSGSPLFA YDSVLQKWVI VGVDSSGGGG GTNWAVVDAN 301 FVNQAIQDDT DALVTFMADQ GPLRWAFNST DGTGTLIQQE TVYQMHGQKG TDLNEGKNLV 361 FNGADGQIAL EDAVNQGAGA LAFNGNYTVF TTNGSTWRGA GLDITQDAEV SWQVNGVQGD 421 NLHKIGEGVL KVNGTGINPG GLKVGDGTVI LAQRPDEDGK VQAFSSVNIA SGRPTVILTD 481 SRQVNSDNIS WGFRGGRLDI NGNDVTFHKI NAADNGANII NTSDTFATVS IKPLTDMTVT 541 INDWDKNKPS GGAAGLLYKY NNIYTHTVDY FIQKRKGYGY YPVNQSDNDS WEYVGHNEMQ 601 AIERVKSRRP IDDRIYHGNI VGNIHLNIDT SHSNGGVIFD GNIDTPDGEL MQSGGQLTFQ 661 GHPVIHAYNG KWLTDKLKSL GDDSVRNQPT SFDQPDWENR TFHLKTLVLK NTYFGLARNA 721 SLNGNIEAVH SSVTLGTPNL YIDLNDGNGT KVTPQKGISV AGQESDMSRY AGKVTLSEQS 781 TLDVREIFTG SIQSQDSDVT VSSRHAKLDD YSRFGNTSLT LQEGARLTAT GGWWSDSDVI 841 VGPAATLSLT GTPAASLPGQ MSPAFYSTNY GAGYQLGAAS ELQFSPYTFV TGDIRAAGDA 901 RIAIGSSDNV VLADNLPLEE QMMYGLFNGF RNVYSGNVSA PQGRMAMTDT QWQMPGDSRI 961 GALRMTRSLA GFTGRGFHTL ATDTLQANQS AFALRTDLKD SDKIVVNQNA EGRDNTLFVN 1021 FLKKPSGKES LNIPLVSAPA GTSPTMFKAA ERVTGFSLVT PTLHTTEQDG KIQWILDGFK 1081 TAPDKGTATS ANSFMGMGYK NFMTEVNNLT KRMGDLRDTQ GEDGMWVRIM NGAGTGDAGY 1141 SDRYTHLQTG FDKKHRLPGA DLFTGVLMSY TDSSASGRAY SGDTHSLGGG LYASVMFDSG 1201 AYMDVIGKYI HHDNDYNAGF AGLGKRNYGT HSWYAGLEGG YRYHLTESLY IEPQAELVYG 1261 TVSGTTLKWN DNGMDVSMRS KTYNPLIGRT GVALGKTFSG KDWSVTAHTG VDYQFDLVTN 1321 GEKALRDASG EKRFTGDKDS RMLYNVGLNA QVKDNVRFGL ELEQSAFGKY NVDHAINANF 1381 RYMF //